Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC16.32■□□□□ 0.2
CACNA1AO00555 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.32■□□□□ 0.2
CACNA1AO00555 IGF1-203ENST00000392904 761 ntTSL 5 BASIC16.32■□□□□ 0.2
CACNA1AO00555 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CACNA1AO00555 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.32■□□□□ 0.2
CACNA1AO00555 GPAA1P2-201ENST00000417923 928 ntBASIC16.32■□□□□ 0.2
CACNA1AO00555 RPS2P36-201ENST00000456516 831 ntBASIC16.32■□□□□ 0.2
CACNA1AO00555 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.32■□□□□ 0.2
CACNA1AO00555 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CACNA1AO00555 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.32■□□□□ 0.2
CACNA1AO00555 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.32■□□□□ 0.2
CACNA1AO00555 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.32■□□□□ 0.2
CACNA1AO00555 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CACNA1AO00555 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CACNA1AO00555 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.31■□□□□ 0.2
CACNA1AO00555 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CACNA1AO00555 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CACNA1AO00555 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CACNA1AO00555 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CACNA1AO00555 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CACNA1AO00555 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.31■□□□□ 0.2
CACNA1AO00555 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.31■□□□□ 0.2
CACNA1AO00555 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.31■□□□□ 0.2
CACNA1AO00555 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.31■□□□□ 0.2
CACNA1AO00555 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.31■□□□□ 0.2
CACNA1AO00555 AC107918.2-201ENST00000530817 355 ntBASIC16.31■□□□□ 0.2
CACNA1AO00555 AC015936.2-201ENST00000593177 259 ntBASIC16.31■□□□□ 0.2
CACNA1AO00555 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CACNA1AO00555 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CACNA1AO00555 AC007431.3-201ENST00000623221 587 ntBASIC16.31■□□□□ 0.2
CACNA1AO00555 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CACNA1AO00555 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CACNA1AO00555 AC099778.1-201ENST00000568593 1911 ntBASIC16.31■□□□□ 0.2
CACNA1AO00555 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CACNA1AO00555 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CACNA1AO00555 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.31■□□□□ 0.2
CACNA1AO00555 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CACNA1AO00555 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CACNA1AO00555 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.3■□□□□ 0.2
CACNA1AO00555 CALR4P-201ENST00000431943 946 ntBASIC16.3■□□□□ 0.2
CACNA1AO00555 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.3■□□□□ 0.2
CACNA1AO00555 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.3■□□□□ 0.2
CACNA1AO00555 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.3■□□□□ 0.2
CACNA1AO00555 AC109635.5-201ENST00000533593 962 ntBASIC16.3■□□□□ 0.2
CACNA1AO00555 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CACNA1AO00555 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.3■□□□□ 0.2
CACNA1AO00555 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
CACNA1AO00555 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.3■□□□□ 0.2
CACNA1AO00555 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.3■□□□□ 0.2
CACNA1AO00555 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CACNA1AO00555 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CACNA1AO00555 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 LINC00982-205ENST00000420957 435 ntBASIC16.3■□□□□ 0.2
CACNA1AO00555 GNAQP1-201ENST00000444815 1067 ntBASIC16.3■□□□□ 0.2
CACNA1AO00555 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC16.3■□□□□ 0.2
CACNA1AO00555 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.3■□□□□ 0.2
CACNA1AO00555 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.3■□□□□ 0.2
CACNA1AO00555 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 AL009183.1-201ENST00000603760 355 ntBASIC16.3■□□□□ 0.2
CACNA1AO00555 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.3■□□□□ 0.2
CACNA1AO00555 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.3■□□□□ 0.2
CACNA1AO00555 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.3■□□□□ 0.2
CACNA1AO00555 AC009336.1-201ENST00000608941 1553 ntBASIC16.3■□□□□ 0.2
CACNA1AO00555 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CACNA1AO00555 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CACNA1AO00555 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.29■□□□□ 0.2
CACNA1AO00555 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.29■□□□□ 0.2
CACNA1AO00555 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CACNA1AO00555 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.29■□□□□ 0.2
CACNA1AO00555 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.29■□□□□ 0.2
CACNA1AO00555 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CACNA1AO00555 AC016629.1-201ENST00000596579 586 ntBASIC16.29■□□□□ 0.2
CACNA1AO00555 SPCS2P2-201ENST00000603270 608 ntBASIC16.29■□□□□ 0.2
CACNA1AO00555 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CACNA1AO00555 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
CACNA1AO00555 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.29■□□□□ 0.2
CACNA1AO00555 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CACNA1AO00555 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.29■□□□□ 0.2
CACNA1AO00555 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.29■□□□□ 0.2
CACNA1AO00555 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
CACNA1AO00555 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CACNA1AO00555 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CACNA1AO00555 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CACNA1AO00555 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms