Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.24■□□□□ 0.19
CPSF4LA6NMK7 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.24■□□□□ 0.19
CPSF4LA6NMK7 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CPSF4LA6NMK7 AL353692.3-201ENST00000407031 1396 ntBASIC16.24■□□□□ 0.19
CPSF4LA6NMK7 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CPSF4LA6NMK7 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 AC073508.3-201ENST00000619697 1419 ntBASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CPSF4LA6NMK7 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 MIR662-201ENST00000384847 95 ntBASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 AC112907.2-201ENST00000448639 330 ntBASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 VENTXP5-201ENST00000523979 775 ntBASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 GPR32P1-201ENST00000601788 811 ntBASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CPSF4LA6NMK7 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 LYSMD4-203ENST00000378904 2122 ntBASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 HBZP1-201ENST00000354915 429 ntBASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 RNF152P1-201ENST00000397754 604 ntBASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 TSPY5P-201ENST00000426936 936 ntBASIC16.21■□□□□ 0.19
CPSF4LA6NMK7 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms