Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 AL139400.1-201ENST00000366220 510 ntBASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 NEK7-201ENST00000367383 586 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 RNF34-208ENST00000555076 593 ntTSL 3 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 AC068137.2-201ENST00000605408 478 ntBASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 ORC5-208ENST00000626700 344 ntTSL 3 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 AC105339.1-204ENST00000636249 355 ntBASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
CCDC61Q9Y6R9 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 PNMT-202ENST00000394246 821 ntTSL 2 BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 DDT-204ENST00000404092 805 ntTSL 3 BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 AL121761.2-201ENST00000598007 1648 ntBASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CCDC61Q9Y6R9 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC23.83■■□□□ 1.4
CCDC61Q9Y6R9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
CCDC61Q9Y6R9 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
CCDC61Q9Y6R9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 AC004461.1-201ENST00000412461 403 ntBASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 TSEN15P1-201ENST00000423257 515 ntBASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 REXO1L3P-201ENST00000622202 1288 ntBASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CCDC61Q9Y6R9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 HLA-DQB1-201ENST00000374943 1656 ntBASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 AC004835.2-201ENST00000603762 682 ntBASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 AC092919.2-201ENST00000623631 1645 ntBASIC23.81■■□□□ 1.4
CCDC61Q9Y6R9 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 AC138028.4-201ENST00000564984 1845 ntBASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 SLC25A6P2-201ENST00000497974 877 ntBASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC61Q9Y6R9 MIR3197-201ENST00000582241 73 ntBASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms