Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SIGLEC30P-201ENST00000455569 941 ntBASIC18.34■□□□□ 0.53
USP3Q9Y6I4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 FAM215A-202ENST00000632077 792 ntBASIC18.34■□□□□ 0.53
USP3Q9Y6I4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP3Q9Y6I4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP3Q9Y6I4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP3Q9Y6I4 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP3Q9Y6I4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP3Q9Y6I4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP3Q9Y6I4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
USP3Q9Y6I4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
USP3Q9Y6I4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
USP3Q9Y6I4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 RPS2P1-201ENST00000434010 821 ntBASIC18.33■□□□□ 0.52
USP3Q9Y6I4 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 AP001005.1-201ENST00000571755 1248 ntBASIC18.33■□□□□ 0.52
USP3Q9Y6I4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 AC107918.4-202ENST00000641623 219 ntBASIC18.33■□□□□ 0.52
USP3Q9Y6I4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.33■□□□□ 0.52
USP3Q9Y6I4 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USP3Q9Y6I4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 OR7E14P-202ENST00000530490 1290 ntBASIC18.31■□□□□ 0.52
USP3Q9Y6I4 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 AL049840.3-201ENST00000602669 611 ntBASIC18.31■□□□□ 0.52
USP3Q9Y6I4 MIR7706-201ENST00000613747 67 ntBASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms