Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 SLC25A1P3-201ENST00000395415 828 ntBASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 AK4P3-201ENST00000418260 669 ntBASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHA3Q9Y5H8 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 KRT18P57-201ENST00000443599 1254 ntBASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 AC046185.3-201ENST00000623228 1824 ntBASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 OR6D1P-202ENST00000641007 5290 ntBASIC18.34■□□□□ 0.53
PCDHA3Q9Y5H8 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.33■□□□□ 0.53
PCDHA3Q9Y5H8 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCDHA3Q9Y5H8 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
PCDHA3Q9Y5H8 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCDHA3Q9Y5H8 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.33■□□□□ 0.53
PCDHA3Q9Y5H8 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
PCDHA3Q9Y5H8 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCDHA3Q9Y5H8 LINC02012-201ENST00000608206 1725 ntBASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 AC019129.2-201ENST00000609837 1235 ntBASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
PCDHA3Q9Y5H8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms