Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
HIF3AQ9Y2N7 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HIF3AQ9Y2N7 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HIF3AQ9Y2N7 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HIF3AQ9Y2N7 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HIF3AQ9Y2N7 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 LYSMD4-203ENST00000378904 2122 ntBASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 AC016396.2-201ENST00000562575 1417 ntBASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 AL671277.2-201ENST00000458060 996 ntBASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 LINC01238-205ENST00000567549 1107 ntBASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 OR6D1P-203ENST00000641209 4860 ntBASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HIF3AQ9Y2N7 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 RCN1P1-201ENST00000400413 996 ntBASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 AL645929.1-201ENST00000420084 975 ntBASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 DUX4L26-201ENST00000489078 1255 ntBASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HIF3AQ9Y2N7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 AC080080.1-201ENST00000625121 2420 ntBASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HIF3AQ9Y2N7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms