Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.74■□□□□ 0.59
CISHQ9NSE2 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.74■□□□□ 0.59
CISHQ9NSE2 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.74■□□□□ 0.59
CISHQ9NSE2 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.74■□□□□ 0.59
CISHQ9NSE2 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.74■□□□□ 0.59
CISHQ9NSE2 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CISHQ9NSE2 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.74■□□□□ 0.59
CISHQ9NSE2 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CISHQ9NSE2 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.74■□□□□ 0.59
CISHQ9NSE2 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CISHQ9NSE2 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 AP001269.4-201ENST00000609611 512 ntBASIC18.73■□□□□ 0.59
CISHQ9NSE2 AC073592.5-201ENST00000624854 528 ntBASIC18.73■□□□□ 0.59
CISHQ9NSE2 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.73■□□□□ 0.59
CISHQ9NSE2 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CISHQ9NSE2 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.72■□□□□ 0.59
CISHQ9NSE2 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CISHQ9NSE2 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
CISHQ9NSE2 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.71■□□□□ 0.59
CISHQ9NSE2 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CISHQ9NSE2 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CISHQ9NSE2 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.71■□□□□ 0.59
CISHQ9NSE2 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.71■□□□□ 0.59
CISHQ9NSE2 UNC93B7-201ENST00000509439 705 ntBASIC18.71■□□□□ 0.59
CISHQ9NSE2 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.71■□□□□ 0.59
CISHQ9NSE2 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 AP005117.1-201ENST00000584346 1413 ntBASIC18.71■□□□□ 0.59
CISHQ9NSE2 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CISHQ9NSE2 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CISHQ9NSE2 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CISHQ9NSE2 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CISHQ9NSE2 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CISHQ9NSE2 AC003669.1-201ENST00000334569 611 ntBASIC18.7■□□□□ 0.58
CISHQ9NSE2 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms