Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 RNA5SP416-201ENST00000516838 111 ntBASIC18.17■□□□□ 0.5
HPS4Q9NQG7 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 AC040169.1-201ENST00000565382 521 ntBASIC18.17■□□□□ 0.5
HPS4Q9NQG7 MIR1199-201ENST00000621445 119 ntBASIC18.17■□□□□ 0.5
HPS4Q9NQG7 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS4Q9NQG7 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 AC005593.1-201ENST00000624894 515 ntBASIC18.16■□□□□ 0.5
HPS4Q9NQG7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 AC135050.7-201ENST00000624508 2218 ntBASIC18.16■□□□□ 0.5
HPS4Q9NQG7 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 WIZP1-201ENST00000531444 2299 ntBASIC18.16■□□□□ 0.5
HPS4Q9NQG7 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS4Q9NQG7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 AL353593.2-201ENST00000602529 1483 ntBASIC18.15■□□□□ 0.5
HPS4Q9NQG7 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 AC136632.2-201ENST00000512891 861 ntBASIC18.15■□□□□ 0.5
HPS4Q9NQG7 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.15■□□□□ 0.5
HPS4Q9NQG7 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HPS4Q9NQG7 AL049757.1-201ENST00000616842 1596 ntBASIC18.15■□□□□ 0.5
HPS4Q9NQG7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms