Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 AC007064.4-201ENST00000637740 555 ntBASIC19.57■□□□□ 0.72
VTA1Q9NP79 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.57■□□□□ 0.72
VTA1Q9NP79 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VTA1Q9NP79 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.56■□□□□ 0.72
VTA1Q9NP79 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 CEND1P1-201ENST00000451006 455 ntBASIC19.56■□□□□ 0.72
VTA1Q9NP79 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
VTA1Q9NP79 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.56■□□□□ 0.72
VTA1Q9NP79 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.56■□□□□ 0.72
VTA1Q9NP79 AC023141.13-201ENST00000604991 943 ntBASIC19.56■□□□□ 0.72
VTA1Q9NP79 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VTA1Q9NP79 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
VTA1Q9NP79 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.56■□□□□ 0.72
VTA1Q9NP79 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.56■□□□□ 0.72
VTA1Q9NP79 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.56■□□□□ 0.72
VTA1Q9NP79 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VTA1Q9NP79 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VTA1Q9NP79 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VTA1Q9NP79 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VTA1Q9NP79 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VTA1Q9NP79 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VTA1Q9NP79 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VTA1Q9NP79 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 CNN2P11-201ENST00000429351 262 ntBASIC19.55■□□□□ 0.72
VTA1Q9NP79 METTL21AP1-201ENST00000438852 635 ntBASIC19.55■□□□□ 0.72
VTA1Q9NP79 AC074386.1-202ENST00000463561 864 ntBASIC19.55■□□□□ 0.72
VTA1Q9NP79 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
VTA1Q9NP79 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.55■□□□□ 0.72
VTA1Q9NP79 AC025580.3-201ENST00000617932 1424 ntBASIC19.55■□□□□ 0.72
VTA1Q9NP79 AC046185.3-201ENST00000623228 1824 ntBASIC19.55■□□□□ 0.72
VTA1Q9NP79 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VTA1Q9NP79 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 CXCL1P1-201ENST00000502804 216 ntBASIC19.54■□□□□ 0.72
VTA1Q9NP79 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
VTA1Q9NP79 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VTA1Q9NP79 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.53■□□□□ 0.72
VTA1Q9NP79 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
VTA1Q9NP79 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
VTA1Q9NP79 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VTA1Q9NP79 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.53■□□□□ 0.72
VTA1Q9NP79 AL135999.2-201ENST00000622438 1686 ntBASIC19.53■□□□□ 0.72
VTA1Q9NP79 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.53■□□□□ 0.72
VTA1Q9NP79 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VTA1Q9NP79 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms