Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.83■□□□□ 0.28
PIF1Q9H611 AC010653.2-201ENST00000623505 997 ntBASIC16.83■□□□□ 0.28
PIF1Q9H611 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PIF1Q9H611 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PIF1Q9H611 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PIF1Q9H611 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PIF1Q9H611 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.28
PIF1Q9H611 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PIF1Q9H611 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PIF1Q9H611 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PIF1Q9H611 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
PIF1Q9H611 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.82■□□□□ 0.28
PIF1Q9H611 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.82■□□□□ 0.28
PIF1Q9H611 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PIF1Q9H611 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PIF1Q9H611 AC128688.1-201ENST00000487626 519 ntBASIC16.82■□□□□ 0.28
PIF1Q9H611 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.82■□□□□ 0.28
PIF1Q9H611 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.82■□□□□ 0.28
PIF1Q9H611 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.82■□□□□ 0.28
PIF1Q9H611 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.82■□□□□ 0.28
PIF1Q9H611 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 PCDHA14-201ENST00000506751 2298 ntBASIC16.82■□□□□ 0.28
PIF1Q9H611 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.82■□□□□ 0.28
PIF1Q9H611 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PIF1Q9H611 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
PIF1Q9H611 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PIF1Q9H611 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PIF1Q9H611 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.82■□□□□ 0.28
PIF1Q9H611 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.81■□□□□ 0.28
PIF1Q9H611 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
PIF1Q9H611 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.81■□□□□ 0.28
PIF1Q9H611 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
PIF1Q9H611 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.81■□□□□ 0.28
PIF1Q9H611 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PIF1Q9H611 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 NAPSB-206ENST00000562112 1266 ntBASIC16.81■□□□□ 0.28
PIF1Q9H611 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PIF1Q9H611 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.81■□□□□ 0.28
PIF1Q9H611 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.81■□□□□ 0.28
PIF1Q9H611 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
PIF1Q9H611 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
PIF1Q9H611 PCDH8P1-201ENST00000428983 2773 ntBASIC16.81■□□□□ 0.28
PIF1Q9H611 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PIF1Q9H611 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.81■□□□□ 0.28
PIF1Q9H611 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.81■□□□□ 0.28
PIF1Q9H611 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PIF1Q9H611 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PIF1Q9H611 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.8■□□□□ 0.28
PIF1Q9H611 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.8■□□□□ 0.28
PIF1Q9H611 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
PIF1Q9H611 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PIF1Q9H611 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PIF1Q9H611 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PIF1Q9H611 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.8■□□□□ 0.28
PIF1Q9H611 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PIF1Q9H611 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PIF1Q9H611 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PIF1Q9H611 AC008741.2-201ENST00000612792 3115 ntBASIC16.8■□□□□ 0.28
PIF1Q9H611 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.8■□□□□ 0.28
PIF1Q9H611 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PIF1Q9H611 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.8■□□□□ 0.28
PIF1Q9H611 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms