Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
IFT140Q96RY7 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
IFT140Q96RY7 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 AC009477.1-201ENST00000452936 217 ntBASIC28.75■■■□□ 2.19
IFT140Q96RY7 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
IFT140Q96RY7 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
IFT140Q96RY7 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
IFT140Q96RY7 WASH6P-202ENST00000359512 1437 ntBASIC28.75■■■□□ 2.19
IFT140Q96RY7 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC28.75■■■□□ 2.19
IFT140Q96RY7 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 AL135999.2-201ENST00000622438 1686 ntBASIC28.75■■■□□ 2.19
IFT140Q96RY7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC28.75■■■□□ 2.19
IFT140Q96RY7 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
IFT140Q96RY7 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
IFT140Q96RY7 MIR346-201ENST00000362234 95 ntBASIC28.74■■■□□ 2.19
IFT140Q96RY7 PGF-202ENST00000405431 666 ntTSL 5 BASIC28.74■■■□□ 2.19
IFT140Q96RY7 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC28.74■■■□□ 2.19
IFT140Q96RY7 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC28.74■■■□□ 2.19
IFT140Q96RY7 GIMAP3P-201ENST00000495150 836 ntBASIC28.74■■■□□ 2.19
IFT140Q96RY7 MIR4453-201ENST00000584019 89 ntBASIC28.74■■■□□ 2.19
IFT140Q96RY7 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC28.74■■■□□ 2.19
IFT140Q96RY7 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC28.74■■■□□ 2.19
IFT140Q96RY7 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC28.74■■■□□ 2.19
IFT140Q96RY7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC28.74■■■□□ 2.19
IFT140Q96RY7 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC28.74■■■□□ 2.19
IFT140Q96RY7 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
IFT140Q96RY7 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
IFT140Q96RY7 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC28.73■■■□□ 2.19
IFT140Q96RY7 CDK4-206ENST00000549606 558 ntTSL 2 BASIC28.73■■■□□ 2.19
IFT140Q96RY7 AC140912.1-201ENST00000577171 1054 ntBASIC28.73■■■□□ 2.19
IFT140Q96RY7 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC28.73■■■□□ 2.19
IFT140Q96RY7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC28.73■■■□□ 2.19
IFT140Q96RY7 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC28.73■■■□□ 2.19
IFT140Q96RY7 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
IFT140Q96RY7 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
IFT140Q96RY7 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
IFT140Q96RY7 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
IFT140Q96RY7 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC28.73■■■□□ 2.19
IFT140Q96RY7 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC28.72■■■□□ 2.19
IFT140Q96RY7 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC28.72■■■□□ 2.19
IFT140Q96RY7 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC28.72■■■□□ 2.19
IFT140Q96RY7 RPS2P32-201ENST00000439199 892 ntBASIC28.72■■■□□ 2.19
IFT140Q96RY7 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC28.72■■■□□ 2.19
IFT140Q96RY7 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
IFT140Q96RY7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
IFT140Q96RY7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
IFT140Q96RY7 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
IFT140Q96RY7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
IFT140Q96RY7 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
IFT140Q96RY7 REEP4-207ENST00000523293 913 ntTSL 3 BASIC28.72■■■□□ 2.19
IFT140Q96RY7 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
IFT140Q96RY7 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC28.71■■■□□ 2.19
IFT140Q96RY7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
IFT140Q96RY7 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC28.71■■■□□ 2.19
IFT140Q96RY7 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
IFT140Q96RY7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC28.71■■■□□ 2.19
IFT140Q96RY7 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC28.71■■■□□ 2.19
IFT140Q96RY7 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC28.71■■■□□ 2.19
IFT140Q96RY7 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC28.71■■■□□ 2.19
IFT140Q96RY7 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC28.71■■■□□ 2.19
IFT140Q96RY7 ACA64.2-201ENST00000459014 129 ntBASIC28.71■■■□□ 2.19
IFT140Q96RY7 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC28.71■■■□□ 2.19
IFT140Q96RY7 AC027369.6-201ENST00000525520 931 ntBASIC28.71■■■□□ 2.19
IFT140Q96RY7 AC017083.2-201ENST00000608069 979 ntBASIC28.71■■■□□ 2.19
IFT140Q96RY7 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
IFT140Q96RY7 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
IFT140Q96RY7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC28.71■■■□□ 2.19
IFT140Q96RY7 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
IFT140Q96RY7 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC28.7■■■□□ 2.19
IFT140Q96RY7 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
IFT140Q96RY7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC28.7■■■□□ 2.19
IFT140Q96RY7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.19
IFT140Q96RY7 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
IFT140Q96RY7 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
IFT140Q96RY7 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
IFT140Q96RY7 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC28.7■■■□□ 2.18
IFT140Q96RY7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
IFT140Q96RY7 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
IFT140Q96RY7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
IFT140Q96RY7 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
IFT140Q96RY7 PTPA-220ENST00000436883 532 ntTSL 4 BASIC28.7■■■□□ 2.18
IFT140Q96RY7 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC28.7■■■□□ 2.18
IFT140Q96RY7 AC005412.3-201ENST00000580309 715 ntBASIC28.7■■■□□ 2.18
IFT140Q96RY7 SSH2-210ENST00000582084 560 ntTSL 3 BASIC28.7■■■□□ 2.18
IFT140Q96RY7 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC28.7■■■□□ 2.18
IFT140Q96RY7 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
IFT140Q96RY7 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
IFT140Q96RY7 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC28.69■■■□□ 2.18
IFT140Q96RY7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
IFT140Q96RY7 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC28.69■■■□□ 2.18
IFT140Q96RY7 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC28.69■■■□□ 2.18
IFT140Q96RY7 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC28.69■■■□□ 2.18
IFT140Q96RY7 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
IFT140Q96RY7 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC28.69■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms