Protein–RNA interactions for Protein: Q96DD0

LRRC39, Leucine-rich repeat-containing protein 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39Q96DD0 AC005332.3-201ENST00000589904 676 ntBASIC17.76■□□□□ 0.43
LRRC39Q96DD0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LRRC39Q96DD0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LRRC39Q96DD0 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.76■□□□□ 0.43
LRRC39Q96DD0 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LRRC39Q96DD0 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LRRC39Q96DD0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
LRRC39Q96DD0 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LRRC39Q96DD0 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 LINC02012-201ENST00000608206 1725 ntBASIC17.75■□□□□ 0.43
LRRC39Q96DD0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 AC124067.4-201ENST00000519691 2379 ntBASIC17.75■□□□□ 0.43
LRRC39Q96DD0 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 TSPY5P-201ENST00000426936 936 ntBASIC17.75■□□□□ 0.43
LRRC39Q96DD0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LRRC39Q96DD0 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 RNF152P1-201ENST00000397754 604 ntBASIC17.74■□□□□ 0.43
LRRC39Q96DD0 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 AC060834.1-201ENST00000443027 2032 ntBASIC17.74■□□□□ 0.43
LRRC39Q96DD0 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 AC010460.3-201ENST00000511359 1579 ntBASIC17.74■□□□□ 0.43
LRRC39Q96DD0 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LRRC39Q96DD0 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.73■□□□□ 0.43
LRRC39Q96DD0 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms