Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 AC092597.1-201ENST00000487352 616 ntBASIC19.96■□□□□ 0.79
ERCC4Q92889 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.96■□□□□ 0.79
ERCC4Q92889 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 AL136038.4-201ENST00000603606 1261 ntBASIC19.96■□□□□ 0.79
ERCC4Q92889 AC145285.6-201ENST00000604632 637 ntBASIC19.96■□□□□ 0.79
ERCC4Q92889 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.96■□□□□ 0.79
ERCC4Q92889 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
ERCC4Q92889 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.96■□□□□ 0.79
ERCC4Q92889 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC4Q92889 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC4Q92889 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC4Q92889 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
ERCC4Q92889 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.95■□□□□ 0.78
ERCC4Q92889 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC4Q92889 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.95■□□□□ 0.78
ERCC4Q92889 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.95■□□□□ 0.78
ERCC4Q92889 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
ERCC4Q92889 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.95■□□□□ 0.78
ERCC4Q92889 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ERCC4Q92889 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.94■□□□□ 0.78
ERCC4Q92889 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.94■□□□□ 0.78
ERCC4Q92889 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
ERCC4Q92889 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
ERCC4Q92889 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.94■□□□□ 0.78
ERCC4Q92889 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.94■□□□□ 0.78
ERCC4Q92889 KRT18P65-201ENST00000439811 1286 ntBASIC19.94■□□□□ 0.78
ERCC4Q92889 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.94■□□□□ 0.78
ERCC4Q92889 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
ERCC4Q92889 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
ERCC4Q92889 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.94■□□□□ 0.78
ERCC4Q92889 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
ERCC4Q92889 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
ERCC4Q92889 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.93■□□□□ 0.78
ERCC4Q92889 AC060834.1-201ENST00000443027 2032 ntBASIC19.93■□□□□ 0.78
ERCC4Q92889 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
ERCC4Q92889 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
ERCC4Q92889 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.93■□□□□ 0.78
ERCC4Q92889 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ERCC4Q92889 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
ERCC4Q92889 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.93■□□□□ 0.78
ERCC4Q92889 AC008687.5-201ENST00000593746 558 ntBASIC19.93■□□□□ 0.78
ERCC4Q92889 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
ERCC4Q92889 AC011558.1-201ENST00000623459 338 ntBASIC19.93■□□□□ 0.78
ERCC4Q92889 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms