Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 LAMB2-219ENST00000542580 594 ntTSL 219.83■□□□□ 0.778e-9■□□□□ 9.1
DDX55Q8NHQ9 HAAO-205ENST00000406007 760 ntTSL 219.55■□□□□ 0.728e-9■□□□□ 9.1
DDX55Q8NHQ9 SLC29A4-205ENST00000439491 805 ntTSL 318.64■□□□□ 0.576e-8■□□□□ 9.1
DDX55Q8NHQ9 LAMB2-210ENST00000483057 558 ntTSL 218.53■□□□□ 0.568e-9■□□□□ 9.1
DDX55Q8NHQ9 NFKBIA-203ENST00000554001 1396 ntTSL 518.45■□□□□ 0.548e-8■□□□□ 9.1
DDX55Q8NHQ9 LAMB2-203ENST00000462930 536 ntTSL 218.01■□□□□ 0.478e-9■□□□□ 9.1
DDX55Q8NHQ9 LAMB2-213ENST00000486298 590 ntTSL 417.28■□□□□ 0.368e-9■□□□□ 9.1
DDX55Q8NHQ9 LINC01226-204ENST00000639839 554 ntTSL 417.26■□□□□ 0.351e-12■□□□□ 9.1
DDX55Q8NHQ9 ENO2-212ENST00000542509 825 ntTSL 517.11■□□□□ 0.338e-9■□□□□ 9.1
DDX55Q8NHQ9 LAMB2-204ENST00000464891 732 ntTSL 417.1■□□□□ 0.338e-9■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-216ENST00000636660 1126 ntTSL 516.65■□□□□ 0.263e-7■□□□□ 9.1
DDX55Q8NHQ9 ENO2-206ENST00000536199 823 ntTSL 516.33■□□□□ 0.28e-9■□□□□ 9.1
DDX55Q8NHQ9 ENO2-208ENST00000537838 541 ntTSL 416.32■□□□□ 0.28e-9■□□□□ 9.1
DDX55Q8NHQ9 HEXA-204ENST00000564677 572 ntTSL 216.21■□□□□ 0.191e-12■□□□□ 9.1
DDX55Q8NHQ9 NFKBIA-208ENST00000557140 1400 ntTSL 5 BASIC14.93□□□□□ -0.028e-8■□□□□ 9.1
DDX55Q8NHQ9 LINC01226-207ENST00000640226 551 ntTSL 414.75□□□□□ -0.051e-12■□□□□ 9.1
DDX55Q8NHQ9 HEXA-205ENST00000565873 721 ntTSL 213.06□□□□□ -0.321e-12■□□□□ 9.1
DDX55Q8NHQ9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.132e-23■□□□□ 9.1
DDX55Q8NHQ9 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.732e-23■□□□□ 9.1
DDX55Q8NHQ9 UAP1-202ENST00000367924 2066 ntAPPRIS ALT1 TSL 5 BASIC9.89□□□□□ -0.832e-23■□□□□ 9.1
DDX55Q8NHQ9 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC8.58□□□□□ -1.042e-23■□□□□ 9.1
DDX55Q8NHQ9 UAP1-207ENST00000486089 1147 ntTSL 26.96□□□□□ -1.32e-23■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-219ENST00000636942 1696 ntTSL 525.19■■□□□ 1.624e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-215ENST00000636646 2151 ntTSL 524.63■■□□□ 1.534e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-201ENST00000463721 1836 ntTSL 224.23■■□□□ 1.474e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC24.18■■□□□ 1.464e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-212ENST00000636089 2230 ntTSL 524.06■■□□□ 1.444e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC22.77■■□□□ 1.244e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.214e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC22.32■■□□□ 1.164e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.154e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-208ENST00000635951 2168 ntTSL 521.91■■□□□ 1.14e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.094e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-226ENST00000637696 2373 ntTSL 521.65■■□□□ 1.064e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-217ENST00000636718 2499 ntTSL 520.99■□□□□ 0.954e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-221ENST00000637199 790 ntTSL 220.43■□□□□ 0.864e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-229ENST00000637978 1758 ntAPPRIS P5 TSL 520.23■□□□□ 0.834e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-207ENST00000635946 2459 ntTSL 520.13■□□□□ 0.814e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-209ENST00000491318 1390 ntTSL 319.83■□□□□ 0.764e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.65■□□□□ 0.744e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-225ENST00000637563 2622 ntTSL 519.61■□□□□ 0.734e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-217ENST00000636880 1457 ntTSL 318.92■□□□□ 0.624e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-213ENST00000635941 1691 ntTSL 518.68■□□□□ 0.584e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-224ENST00000637512 1536 ntTSL 518.46■□□□□ 0.554e-7■□□□□ 9.1
DDX55Q8NHQ9 ACY1-229ENST00000638136 1857 ntTSL 518.43■□□□□ 0.544e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-218ENST00000636826 2940 ntTSL 518.29■□□□□ 0.524e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-220ENST00000637025 2926 ntTSL 518.1■□□□□ 0.494e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-206ENST00000635937 3078 ntTSL 517.09■□□□□ 0.334e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-221ENST00000637130 3158 ntTSL 516.77■□□□□ 0.274e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-227ENST00000637730 2735 ntTSL 515.49■□□□□ 0.074e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-214ENST00000636490 3067 ntTSL 515.4■□□□□ 0.064e-7■□□□□ 9.1
DDX55Q8NHQ9 ABHD14A-ACY1-228ENST00000637778 3628 ntTSL 514.85□□□□□ -0.034e-7■□□□□ 9.1
DDX55Q8NHQ9 FASN-205ENST00000584610 857 ntTSL 223.06■■□□□ 1.284e-30■□□□□ 9.1
DDX55Q8NHQ9 FASN-202ENST00000578424 951 ntTSL 222.45■■□□□ 1.184e-30■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.172e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC15.8■□□□□ 0.122e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-206ENST00000553444 724 ntTSL 214.92□□□□□ -0.022e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-204ENST00000449098 1599 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.042e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-202ENST00000420743 1559 ntTSL 2 BASIC14.59□□□□□ -0.072e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-230ENST00000557201 1371 ntTSL 1 (best) BASIC13.48□□□□□ -0.252e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-214ENST00000554969 1924 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.312e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-232ENST00000557442 1308 ntTSL 212.76□□□□□ -0.372e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-225ENST00000556513 1403 ntTSL 5 BASIC12.6□□□□□ -0.392e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-208ENST00000553753 1790 ntTSL 5 BASIC12.48□□□□□ -0.412e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-219ENST00000555309 1714 ntTSL 5 BASIC12.29□□□□□ -0.442e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-227ENST00000556897 1252 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.572e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-222ENST00000555914 1658 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.642e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-212ENST00000554539 748 ntTSL 510.86□□□□□ -0.672e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-223ENST00000556142 1599 ntTSL 5 BASIC10.7□□□□□ -0.72e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC9.47□□□□□ -0.892e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-201ENST00000336053 3301 ntTSL 2 BASIC9.46□□□□□ -0.92e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC9.22□□□□□ -0.932e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-229ENST00000557157 698 ntTSL 54.95□□□□□ -1.622e-14■□□□□ 9.1
DDX55Q8NHQ9 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.822e-14■□□□□ 9.1
DDX55Q8NHQ9 SERPINA11-201ENST00000334708 1476 ntAPPRIS P1 TSL 1 (best) BASIC8.74□□□□□ -1.013e-10■□□□□ 9.1
DDX55Q8NHQ9 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC25.41■■□□□ 1.663e-23■□□□□ 9.1
DDX55Q8NHQ9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.483e-23■□□□□ 9.1
DDX55Q8NHQ9 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.183e-23■□□□□ 9.1
DDX55Q8NHQ9 RPL29-208ENST00000492277 537 ntTSL 320.42■□□□□ 0.863e-23■□□□□ 9.1
DDX55Q8NHQ9 RPL29-201ENST00000294189 723 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.333e-23■□□□□ 9.1
DDX55Q8NHQ9 RPL29-206ENST00000481629 880 ntTSL 2 BASIC11.38□□□□□ -0.593e-23■□□□□ 9.1
DDX55Q8NHQ9 RPL29-205ENST00000480306 719 ntTSL 211.12□□□□□ -0.633e-23■□□□□ 9.1
DDX55Q8NHQ9 RPL29-207ENST00000486565 574 ntTSL 1 (best)8.72□□□□□ -1.013e-23■□□□□ 9.1
DDX55Q8NHQ9 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.583e-23■□□□□ 9.1
DDX55Q8NHQ9 PLP2-202ENST00000376327 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.151e-15■□□□□ 9.1
DDX55Q8NHQ9 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC9.8□□□□□ -0.848e-7■□□□□ 9.1
DDX55Q8NHQ9 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.938e-7■□□□□ 9.1
DDX55Q8NHQ9 TFRC-205ENST00000426789 354 ntTSL 33.8□□□□□ -1.88e-7■□□□□ 9.1
DDX55Q8NHQ9 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.617e-7■□□□□ 9.1
DDX55Q8NHQ9 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC22.88■■□□□ 1.251e-18■□□□□ 9.1
DDX55Q8NHQ9 CNP-204ENST00000472031 1019 ntTSL 2 BASIC22.58■■□□□ 1.215e-16■□□□□ 9.1
DDX55Q8NHQ9 FLNA-218ENST00000498491 914 ntTSL 521.03■□□□□ 0.965e-8■□□□□ 9.1
DDX55Q8NHQ9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.897e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC20.23■□□□□ 0.837e-7■□□□□ 9.1
DDX55Q8NHQ9 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.49■□□□□ 0.715e-16■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-203ENST00000420199 1002 ntTSL 319.21■□□□□ 0.677e-7■□□□□ 9.1
DDX55Q8NHQ9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.655e-16■□□□□ 9.1
DDX55Q8NHQ9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.581e-23■□□□□ 9.1
DDX55Q8NHQ9 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.537e-7■□□□□ 9.1
DDX55Q8NHQ9 SNHG5-215ENST00000623163 851 ntTSL 518.18■□□□□ 0.57e-7■□□□□ 9.1
Retrieved 100 of 15,504 protein–RNA pairs in 116.5 ms