Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 GUSBP12-201ENST00000513727 720 ntBASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 KRT18P21-201ENST00000515767 1272 ntBASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 AC009053.2-201ENST00000563701 2365 ntBASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC40Q4G0X9 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 TSPY22P-201ENST00000427496 604 ntBASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC40Q4G0X9 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
CCDC40Q4G0X9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 AC096633.1-201ENST00000422446 749 ntBASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CCDC40Q4G0X9 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms