Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.38■□□□□ 0.21
RFX4Q33E94 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
RFX4Q33E94 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.38■□□□□ 0.21
RFX4Q33E94 MIR4785-201ENST00000585005 73 ntBASIC16.38■□□□□ 0.21
RFX4Q33E94 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.38■□□□□ 0.21
RFX4Q33E94 AP000525.1-201ENST00000608286 694 ntBASIC16.38■□□□□ 0.21
RFX4Q33E94 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.38■□□□□ 0.21
RFX4Q33E94 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.38■□□□□ 0.21
RFX4Q33E94 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
RFX4Q33E94 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 AC060834.1-201ENST00000443027 2032 ntBASIC16.38■□□□□ 0.21
RFX4Q33E94 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
RFX4Q33E94 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
RFX4Q33E94 AL162727.3-201ENST00000635661 2787 ntBASIC16.38■□□□□ 0.21
RFX4Q33E94 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
RFX4Q33E94 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
RFX4Q33E94 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
RFX4Q33E94 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.37■□□□□ 0.21
RFX4Q33E94 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.37■□□□□ 0.21
RFX4Q33E94 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.37■□□□□ 0.21
RFX4Q33E94 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
RFX4Q33E94 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
RFX4Q33E94 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.37■□□□□ 0.21
RFX4Q33E94 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.37■□□□□ 0.21
RFX4Q33E94 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.37■□□□□ 0.21
RFX4Q33E94 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.37■□□□□ 0.21
RFX4Q33E94 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.37■□□□□ 0.21
RFX4Q33E94 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.37■□□□□ 0.21
RFX4Q33E94 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.37■□□□□ 0.21
RFX4Q33E94 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.37■□□□□ 0.21
RFX4Q33E94 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.37■□□□□ 0.21
RFX4Q33E94 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.37■□□□□ 0.21
RFX4Q33E94 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 AC010653.2-201ENST00000623505 997 ntBASIC16.37■□□□□ 0.21
RFX4Q33E94 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.37■□□□□ 0.21
RFX4Q33E94 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
RFX4Q33E94 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
RFX4Q33E94 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.37■□□□□ 0.21
RFX4Q33E94 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RFX4Q33E94 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
RFX4Q33E94 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
RFX4Q33E94 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
RFX4Q33E94 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.36■□□□□ 0.21
RFX4Q33E94 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.36■□□□□ 0.21
RFX4Q33E94 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
RFX4Q33E94 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
RFX4Q33E94 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.36■□□□□ 0.21
RFX4Q33E94 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
RFX4Q33E94 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
RFX4Q33E94 MIR718-201ENST00000390190 70 ntBASIC16.36■□□□□ 0.21
RFX4Q33E94 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 AL390955.1-201ENST00000428694 934 ntBASIC16.36■□□□□ 0.21
RFX4Q33E94 TSPY7P-201ENST00000431358 1114 ntBASIC16.36■□□□□ 0.21
RFX4Q33E94 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.36■□□□□ 0.21
RFX4Q33E94 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.36■□□□□ 0.21
RFX4Q33E94 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.36■□□□□ 0.21
RFX4Q33E94 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
RFX4Q33E94 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.36■□□□□ 0.21
RFX4Q33E94 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.36■□□□□ 0.21
RFX4Q33E94 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.36■□□□□ 0.21
RFX4Q33E94 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RFX4Q33E94 AC010240.3-201ENST00000607688 395 ntBASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms