Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
HMGCS1Q01581 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HMGCS1Q01581 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.96■□□□□ 0.31
HMGCS1Q01581 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.96■□□□□ 0.31
HMGCS1Q01581 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.96■□□□□ 0.31
HMGCS1Q01581 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
HMGCS1Q01581 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HMGCS1Q01581 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
HMGCS1Q01581 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGCS1Q01581 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HMGCS1Q01581 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGCS1Q01581 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
HMGCS1Q01581 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.96■□□□□ 0.3
HMGCS1Q01581 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGCS1Q01581 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HMGCS1Q01581 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 AC005104.2-201ENST00000427818 678 ntBASIC16.95■□□□□ 0.3
HMGCS1Q01581 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 AC022616.7-201ENST00000525383 220 ntBASIC16.95■□□□□ 0.3
HMGCS1Q01581 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.95■□□□□ 0.3
HMGCS1Q01581 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HMGCS1Q01581 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 AC010460.3-201ENST00000511359 1579 ntBASIC16.94■□□□□ 0.3
HMGCS1Q01581 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 AC096633.1-201ENST00000422446 749 ntBASIC16.94■□□□□ 0.3
HMGCS1Q01581 AL671277.2-201ENST00000458060 996 ntBASIC16.94■□□□□ 0.3
HMGCS1Q01581 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.94■□□□□ 0.3
HMGCS1Q01581 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HMGCS1Q01581 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms