Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 HLA-F-220ENST00000434407 884 ntBASIC17.28■□□□□ 0.36
PKNOX1P55347 ATP5G1P1-201ENST00000448724 379 ntBASIC17.28■□□□□ 0.36
PKNOX1P55347 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.28■□□□□ 0.36
PKNOX1P55347 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.28■□□□□ 0.36
PKNOX1P55347 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
PKNOX1P55347 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
PKNOX1P55347 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
PKNOX1P55347 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PKNOX1P55347 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.28■□□□□ 0.36
PKNOX1P55347 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
PKNOX1P55347 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
PKNOX1P55347 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 OR6D1P-203ENST00000641209 4860 ntBASIC17.27■□□□□ 0.36
PKNOX1P55347 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.27■□□□□ 0.36
PKNOX1P55347 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.27■□□□□ 0.36
PKNOX1P55347 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.27■□□□□ 0.36
PKNOX1P55347 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
PKNOX1P55347 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
PKNOX1P55347 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.27■□□□□ 0.36
PKNOX1P55347 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.27■□□□□ 0.36
PKNOX1P55347 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.27■□□□□ 0.36
PKNOX1P55347 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.27■□□□□ 0.36
PKNOX1P55347 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.27■□□□□ 0.36
PKNOX1P55347 AC004263.2-201ENST00000617183 678 ntBASIC17.27■□□□□ 0.36
PKNOX1P55347 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.27■□□□□ 0.36
PKNOX1P55347 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PKNOX1P55347 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
PKNOX1P55347 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
PKNOX1P55347 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
PKNOX1P55347 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PKNOX1P55347 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PKNOX1P55347 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PKNOX1P55347 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PKNOX1P55347 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.26■□□□□ 0.35
PKNOX1P55347 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
PKNOX1P55347 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 STARP1-201ENST00000397973 869 ntBASIC17.26■□□□□ 0.35
PKNOX1P55347 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
PKNOX1P55347 FAM8A6P-201ENST00000407496 1135 ntBASIC17.26■□□□□ 0.35
PKNOX1P55347 TSPY12P-201ENST00000421279 868 ntBASIC17.26■□□□□ 0.35
PKNOX1P55347 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.26■□□□□ 0.35
PKNOX1P55347 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.26■□□□□ 0.35
PKNOX1P55347 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.26■□□□□ 0.35
PKNOX1P55347 AL441883.1-201ENST00000566170 1045 ntBASIC17.26■□□□□ 0.35
PKNOX1P55347 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PKNOX1P55347 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
PKNOX1P55347 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PKNOX1P55347 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.26■□□□□ 0.35
PKNOX1P55347 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PKNOX1P55347 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.25■□□□□ 0.35
PKNOX1P55347 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.25■□□□□ 0.35
PKNOX1P55347 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.25■□□□□ 0.35
PKNOX1P55347 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PKNOX1P55347 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PKNOX1P55347 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.25■□□□□ 0.35
PKNOX1P55347 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
PKNOX1P55347 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PKNOX1P55347 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms