Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RN7SL606P-201ENST00000472779 293 ntBASIC17.08■□□□□ 0.32
HNF4AP41235 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HNF4AP41235 AC069148.1-201ENST00000608741 768 ntBASIC17.08■□□□□ 0.32
HNF4AP41235 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HNF4AP41235 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.08■□□□□ 0.32
HNF4AP41235 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
HNF4AP41235 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.08■□□□□ 0.32
HNF4AP41235 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HNF4AP41235 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.07■□□□□ 0.32
HNF4AP41235 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
HNF4AP41235 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.07■□□□□ 0.32
HNF4AP41235 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.07■□□□□ 0.32
HNF4AP41235 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 OR6D1P-203ENST00000641209 4860 ntBASIC17.07■□□□□ 0.32
HNF4AP41235 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HNF4AP41235 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HNF4AP41235 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.07■□□□□ 0.32
HNF4AP41235 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HNF4AP41235 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HNF4AP41235 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.07■□□□□ 0.32
HNF4AP41235 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.07■□□□□ 0.32
HNF4AP41235 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.07■□□□□ 0.32
HNF4AP41235 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.07■□□□□ 0.32
HNF4AP41235 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HNF4AP41235 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.07■□□□□ 0.32
HNF4AP41235 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HNF4AP41235 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.06■□□□□ 0.32
HNF4AP41235 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
HNF4AP41235 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.06■□□□□ 0.32
HNF4AP41235 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 AC011840.4-201ENST00000578471 627 ntBASIC17.06■□□□□ 0.32
HNF4AP41235 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.06■□□□□ 0.32
HNF4AP41235 AP002414.4-201ENST00000589764 1148 ntBASIC17.06■□□□□ 0.32
HNF4AP41235 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 AL353801.3-201ENST00000609898 542 ntBASIC17.06■□□□□ 0.32
HNF4AP41235 AC092119.3-201ENST00000612618 583 ntBASIC17.06■□□□□ 0.32
HNF4AP41235 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.06■□□□□ 0.32
HNF4AP41235 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC17.06■□□□□ 0.32
HNF4AP41235 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.06■□□□□ 0.32
HNF4AP41235 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.06■□□□□ 0.32
HNF4AP41235 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HNF4AP41235 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HNF4AP41235 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.06■□□□□ 0.32
HNF4AP41235 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.06■□□□□ 0.32
HNF4AP41235 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HNF4AP41235 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HNF4AP41235 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HNF4AP41235 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.05■□□□□ 0.32
HNF4AP41235 AP002383.4-201ENST00000442518 975 ntBASIC17.05■□□□□ 0.32
HNF4AP41235 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.05■□□□□ 0.32
HNF4AP41235 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.05■□□□□ 0.32
HNF4AP41235 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HNF4AP41235 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
HNF4AP41235 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HNF4AP41235 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms