Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.77■□□□□ 0.76
CIITAP33076 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.77■□□□□ 0.76
CIITAP33076 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CIITAP33076 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CIITAP33076 AL031284.1-201ENST00000419297 478 ntBASIC19.77■□□□□ 0.76
CIITAP33076 RPS2P1-201ENST00000434010 821 ntBASIC19.77■□□□□ 0.76
CIITAP33076 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.77■□□□□ 0.76
CIITAP33076 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.77■□□□□ 0.76
CIITAP33076 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.77■□□□□ 0.76
CIITAP33076 FAM215A-202ENST00000632077 792 ntBASIC19.77■□□□□ 0.76
CIITAP33076 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CIITAP33076 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.77■□□□□ 0.76
CIITAP33076 AC067852.2-201ENST00000590513 2313 ntBASIC19.77■□□□□ 0.76
CIITAP33076 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CIITAP33076 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CIITAP33076 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
CIITAP33076 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CIITAP33076 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CIITAP33076 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CIITAP33076 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.76■□□□□ 0.75
CIITAP33076 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CIITAP33076 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.76■□□□□ 0.75
CIITAP33076 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
CIITAP33076 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.76■□□□□ 0.75
CIITAP33076 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.76■□□□□ 0.75
CIITAP33076 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.76■□□□□ 0.75
CIITAP33076 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.76■□□□□ 0.75
CIITAP33076 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.76■□□□□ 0.75
CIITAP33076 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.76■□□□□ 0.75
CIITAP33076 AL589182.2-201ENST00000619332 1049 ntBASIC19.76■□□□□ 0.75
CIITAP33076 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
CIITAP33076 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CIITAP33076 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.76■□□□□ 0.75
CIITAP33076 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.76■□□□□ 0.75
CIITAP33076 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CIITAP33076 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CIITAP33076 AC018470.1-201ENST00000624790 3129 ntBASIC19.76■□□□□ 0.75
CIITAP33076 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.75■□□□□ 0.75
CIITAP33076 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
CIITAP33076 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CIITAP33076 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.75■□□□□ 0.75
CIITAP33076 LAGE3P1-201ENST00000425356 484 ntBASIC19.75■□□□□ 0.75
CIITAP33076 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.75■□□□□ 0.75
CIITAP33076 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.75■□□□□ 0.75
CIITAP33076 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.75■□□□□ 0.75
CIITAP33076 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.75■□□□□ 0.75
CIITAP33076 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.75■□□□□ 0.75
CIITAP33076 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.75■□□□□ 0.75
CIITAP33076 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
CIITAP33076 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.75■□□□□ 0.75
CIITAP33076 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CIITAP33076 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CIITAP33076 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CIITAP33076 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.74■□□□□ 0.75
CIITAP33076 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.74■□□□□ 0.75
CIITAP33076 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CIITAP33076 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.74■□□□□ 0.75
CIITAP33076 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.74■□□□□ 0.75
CIITAP33076 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.74■□□□□ 0.75
CIITAP33076 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms