Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.73■□□□□ 0.27
COL5A1P20908 AC140658.5-201ENST00000438532 169 ntBASIC16.73■□□□□ 0.27
COL5A1P20908 FAM86GP-201ENST00000448322 971 ntBASIC16.73■□□□□ 0.27
COL5A1P20908 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.73■□□□□ 0.27
COL5A1P20908 ACTL9-202ENST00000612068 1252 ntBASIC16.73■□□□□ 0.27
COL5A1P20908 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
COL5A1P20908 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.72■□□□□ 0.27
COL5A1P20908 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.72■□□□□ 0.27
COL5A1P20908 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
COL5A1P20908 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
COL5A1P20908 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 AC129492.6-201ENST00000611383 1305 ntBASIC16.72■□□□□ 0.27
COL5A1P20908 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.72■□□□□ 0.27
COL5A1P20908 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.72■□□□□ 0.27
COL5A1P20908 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.72■□□□□ 0.27
COL5A1P20908 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
COL5A1P20908 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.72■□□□□ 0.27
COL5A1P20908 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.72■□□□□ 0.27
COL5A1P20908 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL5A1P20908 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
COL5A1P20908 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL5A1P20908 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL5A1P20908 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL5A1P20908 KRT18P32-201ENST00000424695 1287 ntBASIC16.71■□□□□ 0.27
COL5A1P20908 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.71■□□□□ 0.27
COL5A1P20908 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.71■□□□□ 0.27
COL5A1P20908 AC025678.2-201ENST00000562061 970 ntBASIC16.71■□□□□ 0.27
COL5A1P20908 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.71■□□□□ 0.27
COL5A1P20908 LINC00628-201ENST00000628516 1289 ntBASIC16.71■□□□□ 0.27
COL5A1P20908 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL5A1P20908 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL5A1P20908 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
COL5A1P20908 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL5A1P20908 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL5A1P20908 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL5A1P20908 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL5A1P20908 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL5A1P20908 AC138028.4-201ENST00000564984 1845 ntBASIC16.71■□□□□ 0.27
COL5A1P20908 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL5A1P20908 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 ABALON-201ENST00000629058 1903 ntBASIC16.7■□□□□ 0.26
COL5A1P20908 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.7■□□□□ 0.26
COL5A1P20908 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.7■□□□□ 0.26
COL5A1P20908 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 SPDYE11-202ENST00000450699 704 ntBASIC16.7■□□□□ 0.26
COL5A1P20908 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.7■□□□□ 0.26
COL5A1P20908 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.7■□□□□ 0.26
COL5A1P20908 AC093520.2-201ENST00000561830 333 ntBASIC16.7■□□□□ 0.26
COL5A1P20908 SPDYE9P-201ENST00000570642 692 ntBASIC16.7■□□□□ 0.26
COL5A1P20908 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 SPDYE10P-202ENST00000612005 668 ntBASIC16.7■□□□□ 0.26
COL5A1P20908 SPDYE8P-202ENST00000612377 668 ntBASIC16.7■□□□□ 0.26
COL5A1P20908 REXO1L3P-201ENST00000622202 1288 ntBASIC16.7■□□□□ 0.26
COL5A1P20908 Z92544.3-201ENST00000624747 417 ntBASIC16.7■□□□□ 0.26
COL5A1P20908 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 AC135050.7-201ENST00000624508 2218 ntBASIC16.7■□□□□ 0.26
COL5A1P20908 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
COL5A1P20908 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.7■□□□□ 0.26
COL5A1P20908 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.7■□□□□ 0.26
COL5A1P20908 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.7■□□□□ 0.26
COL5A1P20908 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.7■□□□□ 0.26
COL5A1P20908 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL5A1P20908 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.7■□□□□ 0.26
COL5A1P20908 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.7■□□□□ 0.26
COL5A1P20908 FLJ13224-201ENST00000313737 1514 ntBASIC16.69■□□□□ 0.26
COL5A1P20908 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.69■□□□□ 0.26
COL5A1P20908 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL5A1P20908 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms