Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB1P09429 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGB1P09429 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB1P09429 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB1P09429 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB1P09429 POM121L3P-201ENST00000419331 1163 ntBASIC20.74■□□□□ 0.91
HMGB1P09429 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.74■□□□□ 0.91
HMGB1P09429 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
HMGB1P09429 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB1P09429 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB1P09429 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB1P09429 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB1P09429 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGB1P09429 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB1P09429 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGB1P09429 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
HMGB1P09429 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGB1P09429 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGB1P09429 KRT8P10-201ENST00000450021 1447 ntBASIC20.73■□□□□ 0.91
HMGB1P09429 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
HMGB1P09429 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HMGB1P09429 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
HMGB1P09429 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.73■□□□□ 0.91
HMGB1P09429 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.73■□□□□ 0.91
HMGB1P09429 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.73■□□□□ 0.91
HMGB1P09429 AC012615.1-201ENST00000565797 1299 ntBASIC20.73■□□□□ 0.91
HMGB1P09429 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.73■□□□□ 0.91
HMGB1P09429 BNIP3P18-201ENST00000593976 575 ntBASIC20.73■□□□□ 0.91
HMGB1P09429 AC092329.2-201ENST00000598402 547 ntBASIC20.73■□□□□ 0.91
HMGB1P09429 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGB1P09429 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGB1P09429 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGB1P09429 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGB1P09429 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HMGB1P09429 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGB1P09429 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB1P09429 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.72■□□□□ 0.91
HMGB1P09429 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.72■□□□□ 0.91
HMGB1P09429 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
HMGB1P09429 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
HMGB1P09429 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
HMGB1P09429 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGB1P09429 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGB1P09429 AC104819.1-201ENST00000504587 486 ntBASIC20.72■□□□□ 0.91
HMGB1P09429 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 STK25P1-201ENST00000585406 838 ntBASIC20.72■□□□□ 0.91
HMGB1P09429 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
HMGB1P09429 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
HMGB1P09429 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
HMGB1P09429 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGB1P09429 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
HMGB1P09429 INTS4P1-201ENST00000438455 1935 ntBASIC20.72■□□□□ 0.91
HMGB1P09429 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB1P09429 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
HMGB1P09429 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
HMGB1P09429 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGB1P09429 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
HMGB1P09429 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGB1P09429 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
HMGB1P09429 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.71■□□□□ 0.91
HMGB1P09429 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
HMGB1P09429 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGB1P09429 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 AC074051.2-201ENST00000565115 352 ntBASIC20.71■□□□□ 0.91
HMGB1P09429 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
HMGB1P09429 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.71■□□□□ 0.91
HMGB1P09429 AD001527.2-201ENST00000622994 785 ntBASIC20.71■□□□□ 0.91
HMGB1P09429 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB1P09429 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HMGB1P09429 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms