Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHRNA1P02708 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.03■□□□□ 0.64
CHRNA1P02708 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
CHRNA1P02708 AC004408.2-201ENST00000623613 2777 ntBASIC19.03■□□□□ 0.64
CHRNA1P02708 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CHRNA1P02708 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CHRNA1P02708 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CHRNA1P02708 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHRNA1P02708 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.02■□□□□ 0.64
CHRNA1P02708 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CHRNA1P02708 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CHRNA1P02708 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHRNA1P02708 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.02■□□□□ 0.64
CHRNA1P02708 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHRNA1P02708 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.02■□□□□ 0.64
CHRNA1P02708 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.02■□□□□ 0.64
CHRNA1P02708 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHRNA1P02708 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHRNA1P02708 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHRNA1P02708 CNN2P11-201ENST00000429351 262 ntBASIC19.02■□□□□ 0.64
CHRNA1P02708 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.02■□□□□ 0.64
CHRNA1P02708 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.02■□□□□ 0.64
CHRNA1P02708 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.02■□□□□ 0.64
CHRNA1P02708 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.02■□□□□ 0.64
CHRNA1P02708 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CHRNA1P02708 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CHRNA1P02708 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.02■□□□□ 0.64
CHRNA1P02708 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.02■□□□□ 0.63
CHRNA1P02708 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CHRNA1P02708 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.63
CHRNA1P02708 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
CHRNA1P02708 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.02■□□□□ 0.63
CHRNA1P02708 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.02■□□□□ 0.63
CHRNA1P02708 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CHRNA1P02708 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CHRNA1P02708 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.02■□□□□ 0.63
CHRNA1P02708 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 AC009113.1-201ENST00000570267 2443 ntBASIC19.01■□□□□ 0.63
CHRNA1P02708 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
CHRNA1P02708 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
CHRNA1P02708 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.01■□□□□ 0.63
CHRNA1P02708 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.01■□□□□ 0.63
CHRNA1P02708 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CHRNA1P02708 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.01■□□□□ 0.63
CHRNA1P02708 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CHRNA1P02708 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CHRNA1P02708 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.01■□□□□ 0.63
CHRNA1P02708 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.01■□□□□ 0.63
CHRNA1P02708 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.01■□□□□ 0.63
CHRNA1P02708 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.01■□□□□ 0.63
CHRNA1P02708 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.01■□□□□ 0.63
CHRNA1P02708 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CHRNA1P02708 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHRNA1P02708 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
CHRNA1P02708 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19■□□□□ 0.63
CHRNA1P02708 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHRNA1P02708 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19■□□□□ 0.63
CHRNA1P02708 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 AC074386.1-202ENST00000463561 864 ntBASIC19■□□□□ 0.63
CHRNA1P02708 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19■□□□□ 0.63
CHRNA1P02708 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19■□□□□ 0.63
CHRNA1P02708 MNT-208ENST00000575394 606 ntTSL 4 BASIC19■□□□□ 0.63
CHRNA1P02708 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19■□□□□ 0.63
CHRNA1P02708 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHRNA1P02708 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19■□□□□ 0.63
CHRNA1P02708 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19■□□□□ 0.63
CHRNA1P02708 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHRNA1P02708 AL135999.2-201ENST00000622438 1686 ntBASIC19■□□□□ 0.63
CHRNA1P02708 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CHRNA1P02708 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms