Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VPS4BO75351 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
VPS4BO75351 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 PCDHA12-202ENST00000613593 2588 ntBASIC17.28■□□□□ 0.36
VPS4BO75351 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS4BO75351 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4BO75351 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4BO75351 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VPS4BO75351 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS4BO75351 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
VPS4BO75351 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4BO75351 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4BO75351 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS4BO75351 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4BO75351 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS4BO75351 DDX43P3-201ENST00000441064 443 ntBASIC17.27■□□□□ 0.36
VPS4BO75351 BX276092.5-203ENST00000456199 560 ntBASIC17.27■□□□□ 0.36
VPS4BO75351 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.27■□□□□ 0.36
VPS4BO75351 AC113404.2-201ENST00000507884 177 ntBASIC17.27■□□□□ 0.36
VPS4BO75351 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS4BO75351 MIR3917-201ENST00000580971 93 ntBASIC17.27■□□□□ 0.36
VPS4BO75351 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS4BO75351 AL121672.3-201ENST00000608644 468 ntBASIC17.27■□□□□ 0.36
VPS4BO75351 AC024243.1-201ENST00000609234 778 ntBASIC17.27■□□□□ 0.36
VPS4BO75351 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.27■□□□□ 0.36
VPS4BO75351 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4BO75351 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4BO75351 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4BO75351 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.27■□□□□ 0.35
VPS4BO75351 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.27■□□□□ 0.35
VPS4BO75351 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.27■□□□□ 0.35
VPS4BO75351 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS4BO75351 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS4BO75351 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.27■□□□□ 0.35
VPS4BO75351 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS4BO75351 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS4BO75351 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS4BO75351 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
VPS4BO75351 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS4BO75351 TSSC2-201ENST00000450217 709 ntBASIC17.26■□□□□ 0.35
VPS4BO75351 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS4BO75351 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS4BO75351 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS4BO75351 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS4BO75351 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 AC023511.2-201ENST00000618803 211 ntBASIC17.26■□□□□ 0.35
VPS4BO75351 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VPS4BO75351 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VPS4BO75351 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS4BO75351 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
VPS4BO75351 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4BO75351 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 OR6D1P-203ENST00000641209 4860 ntBASIC17.25■□□□□ 0.35
VPS4BO75351 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS4BO75351 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 SPDYE15P-201ENST00000424157 909 ntBASIC17.25■□□□□ 0.35
VPS4BO75351 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS4BO75351 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4BO75351 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
VPS4BO75351 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS4BO75351 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms