Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.72■□□□□ 0.27
PROM1O43490 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.72■□□□□ 0.27
PROM1O43490 AC009533.2-201ENST00000543664 586 ntBASIC16.72■□□□□ 0.27
PROM1O43490 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.72■□□□□ 0.27
PROM1O43490 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
PROM1O43490 AC092329.2-201ENST00000598402 547 ntBASIC16.72■□□□□ 0.27
PROM1O43490 AC092119.3-201ENST00000612618 583 ntBASIC16.72■□□□□ 0.27
PROM1O43490 AC093458.2-201ENST00000623150 629 ntBASIC16.72■□□□□ 0.27
PROM1O43490 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.72■□□□□ 0.27
PROM1O43490 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
PROM1O43490 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.72■□□□□ 0.27
PROM1O43490 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.72■□□□□ 0.27
PROM1O43490 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.72■□□□□ 0.27
PROM1O43490 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PROM1O43490 AC099398.1-201ENST00000567919 2776 ntBASIC16.72■□□□□ 0.27
PROM1O43490 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.71■□□□□ 0.27
PROM1O43490 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.71■□□□□ 0.27
PROM1O43490 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PROM1O43490 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.71■□□□□ 0.27
PROM1O43490 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PROM1O43490 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
PROM1O43490 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
PROM1O43490 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 IGHV3-47-201ENST00000425060 335 ntBASIC16.71■□□□□ 0.27
PROM1O43490 AC005104.2-201ENST00000427818 678 ntBASIC16.71■□□□□ 0.27
PROM1O43490 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.71■□□□□ 0.27
PROM1O43490 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.71■□□□□ 0.27
PROM1O43490 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.71■□□□□ 0.27
PROM1O43490 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.71■□□□□ 0.27
PROM1O43490 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.71■□□□□ 0.27
PROM1O43490 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.71■□□□□ 0.27
PROM1O43490 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.71■□□□□ 0.27
PROM1O43490 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.71■□□□□ 0.27
PROM1O43490 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PROM1O43490 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.71■□□□□ 0.27
PROM1O43490 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PROM1O43490 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PROM1O43490 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.26
PROM1O43490 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PROM1O43490 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PROM1O43490 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
PROM1O43490 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
PROM1O43490 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
PROM1O43490 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 AC141586.5-201ENST00000624546 2050 ntBASIC16.7■□□□□ 0.26
PROM1O43490 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.7■□□□□ 0.26
PROM1O43490 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PROM1O43490 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.7■□□□□ 0.26
PROM1O43490 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.7■□□□□ 0.26
PROM1O43490 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.7■□□□□ 0.26
PROM1O43490 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.7■□□□□ 0.26
PROM1O43490 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.7■□□□□ 0.26
PROM1O43490 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
PROM1O43490 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.7■□□□□ 0.26
PROM1O43490 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.7■□□□□ 0.26
PROM1O43490 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PROM1O43490 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PROM1O43490 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PROM1O43490 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PROM1O43490 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PROM1O43490 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms