Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.23■□□□□ 0.67
CLDN3O15551 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.23■□□□□ 0.67
CLDN3O15551 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.23■□□□□ 0.67
CLDN3O15551 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.23■□□□□ 0.67
CLDN3O15551 AC109462.3-201ENST00000573934 613 ntBASIC19.23■□□□□ 0.67
CLDN3O15551 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.23■□□□□ 0.67
CLDN3O15551 AC019129.2-201ENST00000609837 1235 ntBASIC19.23■□□□□ 0.67
CLDN3O15551 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.23■□□□□ 0.67
CLDN3O15551 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 AL031008.1-201ENST00000619963 541 ntBASIC19.23■□□□□ 0.67
CLDN3O15551 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.23■□□□□ 0.67
CLDN3O15551 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CLDN3O15551 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
CLDN3O15551 KRT8P10-201ENST00000450021 1447 ntBASIC19.23■□□□□ 0.67
CLDN3O15551 REXO1L11P-201ENST00000620964 1927 ntBASIC19.23■□□□□ 0.67
CLDN3O15551 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CLDN3O15551 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.22■□□□□ 0.67
CLDN3O15551 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.22■□□□□ 0.67
CLDN3O15551 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CLDN3O15551 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.22■□□□□ 0.67
CLDN3O15551 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 AC079781.3-201ENST00000449110 356 ntBASIC19.22■□□□□ 0.67
CLDN3O15551 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
CLDN3O15551 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CLDN3O15551 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.22■□□□□ 0.67
CLDN3O15551 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
CLDN3O15551 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CLDN3O15551 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.22■□□□□ 0.67
CLDN3O15551 AL353593.2-201ENST00000602529 1483 ntBASIC19.22■□□□□ 0.67
CLDN3O15551 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.22■□□□□ 0.67
CLDN3O15551 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CLDN3O15551 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.21■□□□□ 0.67
CLDN3O15551 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.21■□□□□ 0.67
CLDN3O15551 AC134043.2-201ENST00000624206 2238 ntBASIC19.21■□□□□ 0.67
CLDN3O15551 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.21■□□□□ 0.67
CLDN3O15551 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.21■□□□□ 0.67
CLDN3O15551 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.21■□□□□ 0.67
CLDN3O15551 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.21■□□□□ 0.67
CLDN3O15551 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
CLDN3O15551 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.21■□□□□ 0.67
CLDN3O15551 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
CLDN3O15551 IGHV3-52-201ENST00000519770 353 ntBASIC19.21■□□□□ 0.67
CLDN3O15551 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.21■□□□□ 0.67
CLDN3O15551 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.21■□□□□ 0.67
CLDN3O15551 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 AC104692.2-201ENST00000603054 253 ntBASIC19.21■□□□□ 0.67
CLDN3O15551 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.21■□□□□ 0.67
CLDN3O15551 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.21■□□□□ 0.67
CLDN3O15551 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CLDN3O15551 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CLDN3O15551 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLDN3O15551 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CLDN3O15551 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
CLDN3O15551 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.2■□□□□ 0.66
CLDN3O15551 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
CLDN3O15551 AC005104.2-201ENST00000427818 678 ntBASIC19.2■□□□□ 0.66
CLDN3O15551 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.2■□□□□ 0.66
CLDN3O15551 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.2■□□□□ 0.66
CLDN3O15551 FGFR3P6-201ENST00000457012 610 ntBASIC19.2■□□□□ 0.66
CLDN3O15551 AC002558.1-201ENST00000488906 803 ntBASIC19.2■□□□□ 0.66
CLDN3O15551 AL160237.2-201ENST00000556165 472 ntBASIC19.2■□□□□ 0.66
CLDN3O15551 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.2■□□□□ 0.66
CLDN3O15551 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.2■□□□□ 0.66
CLDN3O15551 AC073592.5-201ENST00000624854 528 ntBASIC19.2■□□□□ 0.66
CLDN3O15551 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CLDN3O15551 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLDN3O15551 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.2■□□□□ 0.66
CLDN3O15551 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms