Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SDCBPO00560 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.99□□□□□ -0.01
SDCBPO00560 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.99□□□□□ -0.01
SDCBPO00560 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC14.99□□□□□ -0.01
SDCBPO00560 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
SDCBPO00560 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC14.99□□□□□ -0.01
SDCBPO00560 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
SDCBPO00560 AC034232.1-201ENST00000506026 1064 ntBASIC14.99□□□□□ -0.01
SDCBPO00560 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
SDCBPO00560 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC14.99□□□□□ -0.01
SDCBPO00560 AC008687.5-201ENST00000593746 558 ntBASIC14.99□□□□□ -0.01
SDCBPO00560 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 AC140113.3-201ENST00000605663 199 ntBASIC14.99□□□□□ -0.01
SDCBPO00560 AC073912.3-201ENST00000624414 853 ntBASIC14.99□□□□□ -0.01
SDCBPO00560 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SDCBPO00560 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 AC106886.4-201ENST00000623557 2502 ntBASIC14.99□□□□□ -0.01
SDCBPO00560 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SDCBPO00560 HLA-J-201ENST00000462773 1622 ntBASIC14.99□□□□□ -0.01
SDCBPO00560 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SDCBPO00560 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.99□□□□□ -0.01
SDCBPO00560 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
SDCBPO00560 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SDCBPO00560 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 PBK-203ENST00000522944 1499 ntTSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
SDCBPO00560 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SDCBPO00560 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC14.98□□□□□ -0.01
SDCBPO00560 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 AL157888.1-201ENST00000631930 593 ntBASIC14.98□□□□□ -0.01
SDCBPO00560 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
SDCBPO00560 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.98□□□□□ -0.01
SDCBPO00560 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.98□□□□□ -0.01
SDCBPO00560 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
SDCBPO00560 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SDCBPO00560 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
SDCBPO00560 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.98□□□□□ -0.01
SDCBPO00560 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.98□□□□□ -0.01
SDCBPO00560 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
SDCBPO00560 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.97□□□□□ -0.01
SDCBPO00560 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.97□□□□□ -0.01
SDCBPO00560 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SDCBPO00560 AC022898.2-201ENST00000616822 1312 ntBASIC14.97□□□□□ -0.01
SDCBPO00560 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.97□□□□□ -0.01
SDCBPO00560 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
SDCBPO00560 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
SDCBPO00560 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.97□□□□□ -0.01
SDCBPO00560 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.97□□□□□ -0.01
SDCBPO00560 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
SDCBPO00560 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
SDCBPO00560 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
SDCBPO00560 CD70-202ENST00000423145 881 ntTSL 2 BASIC14.97□□□□□ -0.01
SDCBPO00560 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC14.97□□□□□ -0.01
SDCBPO00560 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC14.97□□□□□ -0.01
SDCBPO00560 RPS20-210ENST00000523936 899 ntTSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms