Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
CACNA1AO00555 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.35■□□□□ 0.21
CACNA1AO00555 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
CACNA1AO00555 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
CACNA1AO00555 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CACNA1AO00555 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.35■□□□□ 0.21
CACNA1AO00555 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CACNA1AO00555 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CACNA1AO00555 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CACNA1AO00555 COX5BP2-201ENST00000392354 334 ntBASIC16.35■□□□□ 0.21
CACNA1AO00555 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.35■□□□□ 0.21
CACNA1AO00555 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CACNA1AO00555 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
CACNA1AO00555 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
CACNA1AO00555 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.34■□□□□ 0.21
CACNA1AO00555 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.34■□□□□ 0.21
CACNA1AO00555 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.34■□□□□ 0.21
CACNA1AO00555 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.34■□□□□ 0.21
CACNA1AO00555 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.34■□□□□ 0.21
CACNA1AO00555 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.34■□□□□ 0.21
CACNA1AO00555 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.34■□□□□ 0.21
CACNA1AO00555 STK25P1-201ENST00000585406 838 ntBASIC16.34■□□□□ 0.21
CACNA1AO00555 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
CACNA1AO00555 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.34■□□□□ 0.21
CACNA1AO00555 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC16.34■□□□□ 0.21
CACNA1AO00555 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.34■□□□□ 0.21
CACNA1AO00555 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.34■□□□□ 0.21
CACNA1AO00555 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.34■□□□□ 0.21
CACNA1AO00555 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 EP400NL-214ENST00000641289 2402 ntBASIC16.34■□□□□ 0.21
CACNA1AO00555 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 RNA5SP412-201ENST00000516234 123 ntBASIC16.34■□□□□ 0.21
CACNA1AO00555 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.34■□□□□ 0.21
CACNA1AO00555 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.34■□□□□ 0.21
CACNA1AO00555 AC243960.2-201ENST00000600996 747 ntBASIC16.34■□□□□ 0.21
CACNA1AO00555 AL844908.2-201ENST00000609461 460 ntBASIC16.34■□□□□ 0.21
CACNA1AO00555 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CACNA1AO00555 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
CACNA1AO00555 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CACNA1AO00555 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CACNA1AO00555 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CACNA1AO00555 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.33■□□□□ 0.2
CACNA1AO00555 IGHV3-62-201ENST00000520057 340 ntBASIC16.33■□□□□ 0.2
CACNA1AO00555 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.33■□□□□ 0.2
CACNA1AO00555 AC008267.7-201ENST00000624570 1194 ntBASIC16.33■□□□□ 0.2
CACNA1AO00555 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CACNA1AO00555 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CACNA1AO00555 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CACNA1AO00555 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.33■□□□□ 0.2
CACNA1AO00555 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CACNA1AO00555 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CACNA1AO00555 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC16.33■□□□□ 0.2
CACNA1AO00555 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CACNA1AO00555 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CACNA1AO00555 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CACNA1AO00555 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.33■□□□□ 0.2
CACNA1AO00555 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CACNA1AO00555 TEX28P1-201ENST00000613479 1221 ntBASIC16.33■□□□□ 0.2
CACNA1AO00555 AL021578.1-201ENST00000613646 709 ntBASIC16.33■□□□□ 0.2
CACNA1AO00555 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.33■□□□□ 0.2
CACNA1AO00555 TEX28P2-201ENST00000617764 1221 ntBASIC16.33■□□□□ 0.2
CACNA1AO00555 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.32■□□□□ 0.2
CACNA1AO00555 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CACNA1AO00555 PDIA3P1-201ENST00000471856 1510 ntBASIC16.32■□□□□ 0.2
CACNA1AO00555 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 ACTG1P4-201ENST00000425123 1122 ntBASIC16.32■□□□□ 0.2
CACNA1AO00555 AC114501.2-201ENST00000439631 535 ntBASIC16.32■□□□□ 0.2
CACNA1AO00555 AC114501.1-201ENST00000445949 172 ntBASIC16.32■□□□□ 0.2
CACNA1AO00555 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.32■□□□□ 0.2
CACNA1AO00555 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC16.32■□□□□ 0.2
CACNA1AO00555 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CACNA1AO00555 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CACNA1AO00555 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CACNA1AO00555 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
CACNA1AO00555 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms