Protein–RNA interactions for Protein: Q9ULT6

ZNRF3, E3 ubiquitin-protein ligase ZNRF3, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNRF3Q9ULT6 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC20.99■□□□□ 0.95
ZNRF3Q9ULT6 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC20.99■□□□□ 0.95
ZNRF3Q9ULT6 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC20.99■□□□□ 0.95
ZNRF3Q9ULT6 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNRF3Q9ULT6 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.99■□□□□ 0.95
ZNRF3Q9ULT6 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNRF3Q9ULT6 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNRF3Q9ULT6 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNRF3Q9ULT6 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.99■□□□□ 0.95
ZNRF3Q9ULT6 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 INGX-202ENST00000489074 768 ntBASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 VPS29-207ENST00000549970 818 ntTSL 3 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 AC099522.2-201ENST00000607001 744 ntBASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNRF3Q9ULT6 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 AC093677.2-201ENST00000600169 1863 ntBASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 SPDYE11-202ENST00000450699 704 ntBASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 SPDYE9P-201ENST00000570642 692 ntBASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 SPDYE10P-202ENST00000612005 668 ntBASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 SPDYE8P-202ENST00000612377 668 ntBASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC20.97■□□□□ 0.95
ZNRF3Q9ULT6 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 AC015922.1-201ENST00000421102 1152 ntBASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 AC055876.3-201ENST00000431496 288 ntBASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 CNN2P2-201ENST00000443536 909 ntBASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 CNN2P3-201ENST00000450201 906 ntBASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 SLC25A6P2-201ENST00000497974 877 ntBASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 AC138649.4-201ENST00000612222 287 ntBASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 AL136317.3-201ENST00000618497 906 ntBASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 AC129492.6-201ENST00000611383 1305 ntBASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ZNRF3Q9ULT6 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
ZNRF3Q9ULT6 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms