Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC39Q9UFE4 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 CROCCP1-201ENST00000426910 5675 ntBASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC39Q9UFE4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 STARP1-201ENST00000397973 869 ntBASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC39Q9UFE4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
CCDC39Q9UFE4 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 AC117947.1-201ENST00000427448 529 ntBASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC39Q9UFE4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.38■□□□□ 0.85
CCDC39Q9UFE4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC39Q9UFE4 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CCDC39Q9UFE4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.38■□□□□ 0.85
CCDC39Q9UFE4 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms