Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 PMS2P7-201ENST00000506558 1336 ntBASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 CSF3-203ENST00000394148 622 ntTSL 3 BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RPAP1Q9BWH6 PP12613-201ENST00000424958 2230 ntBASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 AL645608.8-201ENST00000606034 2086 ntBASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 FUOM-202ENST00000368551 628 ntTSL 3 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 AL356309.3-201ENST00000624132 1934 ntBASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RPAP1Q9BWH6 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RPAP1Q9BWH6 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.33■■□□□ 1.01
RPAP1Q9BWH6 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RPAP1Q9BWH6 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RPAP1Q9BWH6 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.33■■□□□ 1
RPAP1Q9BWH6 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.33■■□□□ 1
RPAP1Q9BWH6 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC21.33■■□□□ 1
RPAP1Q9BWH6 MIR1233-2-201ENST00000408138 82 ntBASIC21.33■■□□□ 1
RPAP1Q9BWH6 MIR1233-1-201ENST00000408722 82 ntBASIC21.33■■□□□ 1
RPAP1Q9BWH6 RAB17-203ENST00000409576 466 ntTSL 3 BASIC21.33■■□□□ 1
RPAP1Q9BWH6 PGAM5P1-201ENST00000518923 814 ntBASIC21.33■■□□□ 1
RPAP1Q9BWH6 TERC-201ENST00000602385 541 ntBASIC21.33■■□□□ 1
RPAP1Q9BWH6 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.33■■□□□ 1
RPAP1Q9BWH6 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RPAP1Q9BWH6 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 CEP83-AS1-201ENST00000623122 2482 ntBASIC21.32■■□□□ 1
RPAP1Q9BWH6 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 FABP5-202ENST00000396359 986 ntTSL 5 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 AC092865.5-201ENST00000545435 363 ntBASIC21.32■■□□□ 1
RPAP1Q9BWH6 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.32■■□□□ 1
RPAP1Q9BWH6 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.32■■□□□ 1
RPAP1Q9BWH6 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms