Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
COL12A1Q99715 RAB43P1-201ENST00000561790 589 ntBASIC15.24■□□□□ 0.03
COL12A1Q99715 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.24■□□□□ 0.03
COL12A1Q99715 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC15.24■□□□□ 0.03
COL12A1Q99715 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.24■□□□□ 0.03
COL12A1Q99715 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 AL353593.2-201ENST00000602529 1483 ntBASIC15.24■□□□□ 0.03
COL12A1Q99715 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.24■□□□□ 0.03
COL12A1Q99715 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.23■□□□□ 0.03
COL12A1Q99715 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.23■□□□□ 0.03
COL12A1Q99715 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.23■□□□□ 0.03
COL12A1Q99715 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.23■□□□□ 0.03
COL12A1Q99715 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 AL133338.1-201ENST00000565695 1517 ntBASIC15.23■□□□□ 0.03
COL12A1Q99715 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
COL12A1Q99715 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
COL12A1Q99715 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
COL12A1Q99715 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.23■□□□□ 0.03
COL12A1Q99715 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC15.23■□□□□ 0.03
COL12A1Q99715 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC15.23■□□□□ 0.03
COL12A1Q99715 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.23■□□□□ 0.03
COL12A1Q99715 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.23■□□□□ 0.03
COL12A1Q99715 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.23■□□□□ 0.03
COL12A1Q99715 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.23■□□□□ 0.03
COL12A1Q99715 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.23■□□□□ 0.03
COL12A1Q99715 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.23■□□□□ 0.03
COL12A1Q99715 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
COL12A1Q99715 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
COL12A1Q99715 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL12A1Q99715 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.23■□□□□ 0.03
COL12A1Q99715 TP53TG3HP-202ENST00000569755 579 ntBASIC15.23■□□□□ 0.03
COL12A1Q99715 AC004233.3-201ENST00000607794 1269 ntBASIC15.23■□□□□ 0.03
COL12A1Q99715 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
COL12A1Q99715 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.22■□□□□ 0.03
COL12A1Q99715 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
COL12A1Q99715 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 FAM86MP-201ENST00000340703 885 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.22■□□□□ 0.03
COL12A1Q99715 SPDYE7P-202ENST00000420373 878 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 AL512638.1-201ENST00000457493 794 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 RN7SL589P-201ENST00000481268 310 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
COL12A1Q99715 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.22■□□□□ 0.03
COL12A1Q99715 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.22■□□□□ 0.03
COL12A1Q99715 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.22■□□□□ 0.03
COL12A1Q99715 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.22■□□□□ 0.03
COL12A1Q99715 AL139099.5-201ENST00000635274 300 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC15.22■□□□□ 0.03
COL12A1Q99715 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.22■□□□□ 0.03
COL12A1Q99715 AC100757.3-201ENST00000622361 1406 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 AC112492.5-201ENST00000421897 457 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 AC140658.5-201ENST00000438532 169 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.22■□□□□ 0.03
COL12A1Q99715 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.22■□□□□ 0.03
COL12A1Q99715 AC092658.1-201ENST00000505836 891 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL12A1Q99715 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC15.22■□□□□ 0.03
COL12A1Q99715 AL161938.1-201ENST00000569833 2180 ntBASIC15.22■□□□□ 0.03
COL12A1Q99715 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.22■□□□□ 0.03
COL12A1Q99715 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC15.22■□□□□ 0.03
COL12A1Q99715 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.21■□□□□ 0.03
COL12A1Q99715 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL12A1Q99715 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.21■□□□□ 0.03
COL12A1Q99715 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
COL12A1Q99715 SPDYE14P-201ENST00000442619 822 ntBASIC15.21■□□□□ 0.03
COL12A1Q99715 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms