Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CDX2Q99626 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CDX2Q99626 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CDX2Q99626 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX2Q99626 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 BCYRN1-201ENST00000418539 200 ntBASIC18.2■□□□□ 0.5
CDX2Q99626 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX2Q99626 AC011495.1-201ENST00000498085 584 ntBASIC18.2■□□□□ 0.5
CDX2Q99626 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.2■□□□□ 0.5
CDX2Q99626 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 MIR4538-201ENST00000581377 78 ntBASIC18.2■□□□□ 0.5
CDX2Q99626 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.2■□□□□ 0.5
CDX2Q99626 SPDYE12P-201ENST00000618416 771 ntBASIC18.2■□□□□ 0.5
CDX2Q99626 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX2Q99626 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CDX2Q99626 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CDX2Q99626 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CDX2Q99626 AC125437.2-201ENST00000625180 2167 ntBASIC18.2■□□□□ 0.5
CDX2Q99626 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX2Q99626 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX2Q99626 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.2■□□□□ 0.5
CDX2Q99626 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX2Q99626 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.19■□□□□ 0.5
CDX2Q99626 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.19■□□□□ 0.5
CDX2Q99626 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX2Q99626 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 AC092933.1-201ENST00000393644 945 ntBASIC18.19■□□□□ 0.5
CDX2Q99626 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CDX2Q99626 ACTG1P4-201ENST00000425123 1122 ntBASIC18.19■□□□□ 0.5
CDX2Q99626 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX2Q99626 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.19■□□□□ 0.5
CDX2Q99626 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CDX2Q99626 AL138828.2-201ENST00000615812 383 ntBASIC18.19■□□□□ 0.5
CDX2Q99626 MIR6787-201ENST00000616675 61 ntBASIC18.19■□□□□ 0.5
CDX2Q99626 GPR182-203ENST00000622922 591 ntBASIC18.19■□□□□ 0.5
CDX2Q99626 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.19■□□□□ 0.5
CDX2Q99626 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.19■□□□□ 0.5
CDX2Q99626 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDX2Q99626 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CDX2Q99626 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CDX2Q99626 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CDX2Q99626 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
CDX2Q99626 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CDX2Q99626 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX2Q99626 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX2Q99626 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CDX2Q99626 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX2Q99626 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CDX2Q99626 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.18■□□□□ 0.5
CDX2Q99626 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX2Q99626 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.18■□□□□ 0.5
CDX2Q99626 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.18■□□□□ 0.5
CDX2Q99626 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.18■□□□□ 0.5
CDX2Q99626 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX2Q99626 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDX2Q99626 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
CDX2Q99626 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.18■□□□□ 0.5
CDX2Q99626 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CDX2Q99626 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX2Q99626 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDX2Q99626 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CDX2Q99626 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CDX2Q99626 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX2Q99626 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CDX2Q99626 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.17■□□□□ 0.5
CDX2Q99626 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDX2Q99626 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CDX2Q99626 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.17■□□□□ 0.5
CDX2Q99626 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.17■□□□□ 0.5
CDX2Q99626 AC087163.2-201ENST00000457299 853 ntBASIC18.17■□□□□ 0.5
CDX2Q99626 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.17■□□□□ 0.5
CDX2Q99626 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX2Q99626 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.17■□□□□ 0.5
CDX2Q99626 AP000842.3-202ENST00000569238 1080 ntBASIC18.17■□□□□ 0.5
CDX2Q99626 MIR4515-201ENST00000584082 81 ntBASIC18.17■□□□□ 0.5
CDX2Q99626 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX2Q99626 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.17■□□□□ 0.5
CDX2Q99626 PFAS-212ENST00000625942 396 ntTSL 5 BASIC18.17■□□□□ 0.5
CDX2Q99626 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX2Q99626 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms