Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 SPDYE15P-201ENST00000424157 909 ntBASIC19.99■□□□□ 0.79
ERCC4Q92889 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.99■□□□□ 0.79
ERCC4Q92889 RASA4DP-201ENST00000460726 1199 ntBASIC19.99■□□□□ 0.79
ERCC4Q92889 AC004263.2-201ENST00000617183 678 ntBASIC19.99■□□□□ 0.79
ERCC4Q92889 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.99■□□□□ 0.79
ERCC4Q92889 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
ERCC4Q92889 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.99■□□□□ 0.79
ERCC4Q92889 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.99■□□□□ 0.79
ERCC4Q92889 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 KRT18P22-201ENST00000402024 1347 ntBASIC19.99■□□□□ 0.79
ERCC4Q92889 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.99■□□□□ 0.79
ERCC4Q92889 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
ERCC4Q92889 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
ERCC4Q92889 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
ERCC4Q92889 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
ERCC4Q92889 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
ERCC4Q92889 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.98■□□□□ 0.79
ERCC4Q92889 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
ERCC4Q92889 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.98■□□□□ 0.79
ERCC4Q92889 AC024563.2-201ENST00000603282 481 ntBASIC19.98■□□□□ 0.79
ERCC4Q92889 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.98■□□□□ 0.79
ERCC4Q92889 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.98■□□□□ 0.79
ERCC4Q92889 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
ERCC4Q92889 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.98■□□□□ 0.79
ERCC4Q92889 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.98■□□□□ 0.79
ERCC4Q92889 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
ERCC4Q92889 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.98■□□□□ 0.79
ERCC4Q92889 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
ERCC4Q92889 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ERCC4Q92889 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC19.98■□□□□ 0.79
ERCC4Q92889 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
ERCC4Q92889 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
ERCC4Q92889 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
ERCC4Q92889 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC19.97■□□□□ 0.79
ERCC4Q92889 AP000523.1-201ENST00000398242 1049 ntBASIC19.97■□□□□ 0.79
ERCC4Q92889 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
ERCC4Q92889 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.97■□□□□ 0.79
ERCC4Q92889 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.97■□□□□ 0.79
ERCC4Q92889 AC113404.2-201ENST00000507884 177 ntBASIC19.97■□□□□ 0.79
ERCC4Q92889 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
ERCC4Q92889 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.97■□□□□ 0.79
ERCC4Q92889 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.97■□□□□ 0.79
ERCC4Q92889 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
ERCC4Q92889 AC079328.2-201ENST00000561241 3354 ntBASIC19.97■□□□□ 0.79
ERCC4Q92889 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
ERCC4Q92889 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.97■□□□□ 0.79
ERCC4Q92889 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
ERCC4Q92889 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
ERCC4Q92889 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ERCC4Q92889 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.97■□□□□ 0.79
ERCC4Q92889 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.97■□□□□ 0.79
ERCC4Q92889 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
ERCC4Q92889 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 AC106886.4-201ENST00000623557 2502 ntBASIC19.96■□□□□ 0.79
ERCC4Q92889 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ERCC4Q92889 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.96■□□□□ 0.79
ERCC4Q92889 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms