Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC22.94■■□□□ 1.26
RTF1Q92541 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC22.94■■□□□ 1.26
RTF1Q92541 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
RTF1Q92541 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC22.94■■□□□ 1.26
RTF1Q92541 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC22.94■■□□□ 1.26
RTF1Q92541 AC104109.2-201ENST00000602919 1418 ntBASIC22.94■■□□□ 1.26
RTF1Q92541 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC22.94■■□□□ 1.26
RTF1Q92541 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC22.94■■□□□ 1.26
RTF1Q92541 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
RTF1Q92541 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC22.94■■□□□ 1.26
RTF1Q92541 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC22.94■■□□□ 1.26
RTF1Q92541 RPS29-206ENST00000557111 488 ntTSL 2 BASIC22.94■■□□□ 1.26
RTF1Q92541 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
RTF1Q92541 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC22.94■■□□□ 1.26
RTF1Q92541 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
RTF1Q92541 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC22.94■■□□□ 1.26
RTF1Q92541 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
RTF1Q92541 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC22.93■■□□□ 1.26
RTF1Q92541 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC22.93■■□□□ 1.26
RTF1Q92541 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC22.93■■□□□ 1.26
RTF1Q92541 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC22.93■■□□□ 1.26
RTF1Q92541 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC22.93■■□□□ 1.26
RTF1Q92541 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 S100A2-206ENST00000497140 697 ntTSL 2 BASIC22.93■■□□□ 1.26
RTF1Q92541 KRT18P58-201ENST00000527480 1120 ntBASIC22.93■■□□□ 1.26
RTF1Q92541 AC145285.3-201ENST00000564603 959 ntBASIC22.93■■□□□ 1.26
RTF1Q92541 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC22.93■■□□□ 1.26
RTF1Q92541 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 MIR1199-201ENST00000621445 119 ntBASIC22.93■■□□□ 1.26
RTF1Q92541 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
RTF1Q92541 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.93■■□□□ 1.26
RTF1Q92541 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC22.93■■□□□ 1.26
RTF1Q92541 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
RTF1Q92541 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
RTF1Q92541 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC22.92■■□□□ 1.26
RTF1Q92541 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 PODN-203ENST00000395871 2744 ntTSL 5 BASIC22.92■■□□□ 1.26
RTF1Q92541 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC22.92■■□□□ 1.26
RTF1Q92541 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC22.92■■□□□ 1.26
RTF1Q92541 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC22.92■■□□□ 1.26
RTF1Q92541 KRT18P27-201ENST00000427733 1299 ntBASIC22.92■■□□□ 1.26
RTF1Q92541 AC005104.2-201ENST00000427818 678 ntBASIC22.92■■□□□ 1.26
RTF1Q92541 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC22.92■■□□□ 1.26
RTF1Q92541 RNA5SP415-201ENST00000517246 115 ntBASIC22.92■■□□□ 1.26
RTF1Q92541 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
RTF1Q92541 PIN1-206ENST00000587625 878 ntTSL 2 BASIC22.92■■□□□ 1.26
RTF1Q92541 AL356488.2-201ENST00000602755 427 ntBASIC22.92■■□□□ 1.26
RTF1Q92541 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
RTF1Q92541 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC22.92■■□□□ 1.26
RTF1Q92541 AC009336.1-201ENST00000608941 1553 ntBASIC22.92■■□□□ 1.26
RTF1Q92541 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
RTF1Q92541 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
RTF1Q92541 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC22.91■■□□□ 1.26
RTF1Q92541 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC22.91■■□□□ 1.26
RTF1Q92541 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
RTF1Q92541 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
RTF1Q92541 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms