Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BEST3Q8N1M1 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 AC093909.1-201ENST00000504731 1122 ntBASIC16.36■□□□□ 0.21
BEST3Q8N1M1 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 SART3-203ENST00000546611 1184 ntBASIC16.36■□□□□ 0.21
BEST3Q8N1M1 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BEST3Q8N1M1 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 HNRNPDP1-201ENST00000439535 754 ntBASIC16.35■□□□□ 0.21
BEST3Q8N1M1 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 AL049840.3-201ENST00000602669 611 ntBASIC16.35■□□□□ 0.21
BEST3Q8N1M1 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 IL9RP2-201ENST00000423948 1312 ntBASIC16.35■□□□□ 0.21
BEST3Q8N1M1 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 AL356309.3-201ENST00000624132 1934 ntBASIC16.35■□□□□ 0.21
BEST3Q8N1M1 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.35■□□□□ 0.21
BEST3Q8N1M1 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
BEST3Q8N1M1 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms