Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 BX276092.7-203ENST00000637198 1536 ntBASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 GNAS-203ENST00000306120 1878 ntBASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 MIR346-201ENST00000362234 95 ntBASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 GK-202ENST00000378941 458 ntTSL 3 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 AC243562.1-201ENST00000560672 389 ntBASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 TK1-204ENST00000590430 683 ntTSL 3 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
VPS13DQ5THJ4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 CD7-202ENST00000578509 925 ntTSL 3 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC11.71□□□□□ -0.53
VPS13DQ5THJ4 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 AC055876.3-201ENST00000431496 288 ntBASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 AC138649.4-201ENST00000612222 287 ntBASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 AC084121.4-201ENST00000641598 221 ntBASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 AF228730.8-201ENST00000642140 221 ntBASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 WIZP1-201ENST00000531444 2299 ntBASIC11.71□□□□□ -0.54
VPS13DQ5THJ4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AC112191.1-201ENST00000523689 701 ntBASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 SSH2-211ENST00000590153 570 ntTSL 4 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AC093503.3-201ENST00000624917 2352 ntBASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AL135999.2-201ENST00000622438 1686 ntBASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AL135744.1-201ENST00000565098 629 ntBASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 GGTLC5P-201ENST00000617623 998 ntBASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 DDX43P3-201ENST00000441064 443 ntBASIC11.7□□□□□ -0.54
VPS13DQ5THJ4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms