Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 AP003041.3-201ENST00000527151 707 ntBASIC15.8■□□□□ 0.12
CCDC58Q4VC31 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 AC092666.2-201ENST00000613287 246 ntBASIC15.8■□□□□ 0.12
CCDC58Q4VC31 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 FAM197Y4-202ENST00000622692 608 ntBASIC15.8■□□□□ 0.12
CCDC58Q4VC31 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CCDC58Q4VC31 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.79■□□□□ 0.12
CCDC58Q4VC31 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 IRX5-204ENST00000560154 879 ntTSL 5 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 ETFA-216ENST00000560726 942 ntTSL 3 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CCDC58Q4VC31 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.78■□□□□ 0.12
CCDC58Q4VC31 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms