Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 REEP1-209ENST00000541910 969 ntTSL 2 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 NEK4P2-201ENST00000580004 1012 ntBASIC13.53□□□□□ -0.24
HIST1H1AQ02539 AC008687.5-201ENST00000593746 558 ntBASIC13.53□□□□□ -0.24
HIST1H1AQ02539 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H1AQ02539 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H1AQ02539 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 TMA16-209ENST00000513272 803 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 MIR3917-201ENST00000580971 93 ntBASIC13.52□□□□□ -0.25
HIST1H1AQ02539 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 KRT18P22-201ENST00000402024 1347 ntBASIC13.52□□□□□ -0.25
HIST1H1AQ02539 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H1AQ02539 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HIST1H1AQ02539 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms