Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 AC018445.3-201ENST00000624177 1945 ntBASIC15.1■□□□□ 0.01
ABCA4P78363 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCA4P78363 MKNK2P1-201ENST00000437526 628 ntBASIC15.1■□□□□ 0.01
ABCA4P78363 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.1■□□□□ 0.01
ABCA4P78363 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
ABCA4P78363 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCA4P78363 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCA4P78363 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCA4P78363 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
ABCA4P78363 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
ABCA4P78363 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCA4P78363 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCA4P78363 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.1■□□□□ 0.01
ABCA4P78363 COX20P2-201ENST00000452636 358 ntBASIC15.1■□□□□ 0.01
ABCA4P78363 HLA-J-203ENST00000494367 1087 ntBASIC15.1■□□□□ 0.01
ABCA4P78363 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.1■□□□□ 0.01
ABCA4P78363 MIR4469-201ENST00000583919 79 ntBASIC15.1■□□□□ 0.01
ABCA4P78363 AJ011932.1-201ENST00000621707 465 ntBASIC15.1■□□□□ 0.01
ABCA4P78363 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
ABCA4P78363 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA4P78363 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
ABCA4P78363 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
ABCA4P78363 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA4P78363 AC027612.4-201ENST00000605371 583 ntBASIC15.09■□□□□ 0.01
ABCA4P78363 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.09■□□□□ 0.01
ABCA4P78363 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA4P78363 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA4P78363 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA4P78363 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
ABCA4P78363 SPDYE21P-201ENST00000413323 827 ntBASIC15.09■□□□□ 0.01
ABCA4P78363 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.09■□□□□ 0.01
ABCA4P78363 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.09■□□□□ 0.01
ABCA4P78363 YBX1P5-201ENST00000509441 847 ntBASIC15.09■□□□□ 0.01
ABCA4P78363 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 OR7E47P-204ENST00000575924 449 ntBASIC15.09■□□□□ 0.01
ABCA4P78363 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA4P78363 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 AC093028.1-201ENST00000622998 982 ntBASIC15.09■□□□□ 0.01
ABCA4P78363 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
ABCA4P78363 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA4P78363 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
ABCA4P78363 AP000974.1-201ENST00000623909 2387 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms