Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LIM2P55344 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LIM2P55344 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LIM2P55344 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 POM121L3P-201ENST00000419331 1163 ntBASIC16.72■□□□□ 0.27
LIM2P55344 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
LIM2P55344 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.72■□□□□ 0.27
LIM2P55344 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.72■□□□□ 0.27
LIM2P55344 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.72■□□□□ 0.27
LIM2P55344 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
LIM2P55344 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.72■□□□□ 0.27
LIM2P55344 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.72■□□□□ 0.27
LIM2P55344 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
LIM2P55344 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
LIM2P55344 SIRPAP1-201ENST00000448467 1770 ntBASIC16.72■□□□□ 0.27
LIM2P55344 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIM2P55344 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 LINC00304-203ENST00000565008 1864 ntBASIC16.71■□□□□ 0.27
LIM2P55344 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.71■□□□□ 0.27
LIM2P55344 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.71■□□□□ 0.27
LIM2P55344 NUS1P1-201ENST00000446295 882 ntBASIC16.71■□□□□ 0.27
LIM2P55344 AC122714.2-201ENST00000502787 707 ntBASIC16.71■□□□□ 0.27
LIM2P55344 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.71■□□□□ 0.27
LIM2P55344 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.71■□□□□ 0.27
LIM2P55344 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.71■□□□□ 0.27
LIM2P55344 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.71■□□□□ 0.27
LIM2P55344 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LIM2P55344 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIM2P55344 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
LIM2P55344 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.7■□□□□ 0.26
LIM2P55344 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.7■□□□□ 0.26
LIM2P55344 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.7■□□□□ 0.26
LIM2P55344 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.7■□□□□ 0.26
LIM2P55344 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LIM2P55344 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 RCN1P2-201ENST00000398357 915 ntBASIC16.7■□□□□ 0.26
LIM2P55344 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.7■□□□□ 0.26
LIM2P55344 KRT18P56-201ENST00000507275 550 ntBASIC16.7■□□□□ 0.26
LIM2P55344 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 FOSL1P1-201ENST00000511041 816 ntBASIC16.7■□□□□ 0.26
LIM2P55344 AC138894.3-201ENST00000603787 634 ntBASIC16.7■□□□□ 0.26
LIM2P55344 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.7■□□□□ 0.26
LIM2P55344 AC114341.1-201ENST00000618070 349 ntBASIC16.7■□□□□ 0.26
LIM2P55344 LINC01451-201ENST00000623792 534 ntBASIC16.7■□□□□ 0.26
LIM2P55344 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LIM2P55344 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LIM2P55344 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
LIM2P55344 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIM2P55344 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 INTS4P1-201ENST00000438455 1935 ntBASIC16.69■□□□□ 0.26
LIM2P55344 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LIM2P55344 NUS1P2-201ENST00000417358 873 ntBASIC16.69■□□□□ 0.26
LIM2P55344 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.69■□□□□ 0.26
LIM2P55344 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
LIM2P55344 AC005104.2-201ENST00000427818 678 ntBASIC16.69■□□□□ 0.26
LIM2P55344 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
LIM2P55344 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms