Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.17■□□□□ 0.5
NEK3P51956 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.17■□□□□ 0.5
NEK3P51956 TSPY19P-201ENST00000418461 509 ntBASIC18.17■□□□□ 0.5
NEK3P51956 AL845331.1-201ENST00000424978 1190 ntBASIC18.17■□□□□ 0.5
NEK3P51956 IGHV3-47-201ENST00000425060 335 ntBASIC18.17■□□□□ 0.5
NEK3P51956 TSPY18P-201ENST00000441642 509 ntBASIC18.17■□□□□ 0.5
NEK3P51956 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
NEK3P51956 AP005901.3-202ENST00000581653 237 ntBASIC18.17■□□□□ 0.5
NEK3P51956 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
NEK3P51956 AC138894.3-201ENST00000603787 634 ntBASIC18.17■□□□□ 0.5
NEK3P51956 AL353801.3-201ENST00000609898 542 ntBASIC18.17■□□□□ 0.5
NEK3P51956 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
NEK3P51956 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.17■□□□□ 0.5
NEK3P51956 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
NEK3P51956 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 NSUN5P1-202ENST00000421140 1535 ntBASIC18.17■□□□□ 0.5
NEK3P51956 NSUN5P2-203ENST00000457352 1529 ntBASIC18.17■□□□□ 0.5
NEK3P51956 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.17■□□□□ 0.5
NEK3P51956 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.17■□□□□ 0.5
NEK3P51956 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
NEK3P51956 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NEK3P51956 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.16■□□□□ 0.5
NEK3P51956 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.16■□□□□ 0.5
NEK3P51956 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 AC091607.1-201ENST00000490318 1060 ntBASIC18.16■□□□□ 0.5
NEK3P51956 AC091304.2-201ENST00000564639 760 ntBASIC18.16■□□□□ 0.5
NEK3P51956 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.16■□□□□ 0.5
NEK3P51956 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.16■□□□□ 0.5
NEK3P51956 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.16■□□□□ 0.5
NEK3P51956 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
NEK3P51956 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
NEK3P51956 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.16■□□□□ 0.5
NEK3P51956 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
NEK3P51956 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
NEK3P51956 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
NEK3P51956 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.15■□□□□ 0.5
NEK3P51956 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.15■□□□□ 0.5
NEK3P51956 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.15■□□□□ 0.5
NEK3P51956 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
NEK3P51956 MINOS1P3-201ENST00000457048 203 ntBASIC18.15■□□□□ 0.5
NEK3P51956 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.15■□□□□ 0.5
NEK3P51956 LINC01711-201ENST00000598340 967 ntBASIC18.15■□□□□ 0.5
NEK3P51956 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 AL732292.2-201ENST00000609649 430 ntBASIC18.15■□□□□ 0.5
NEK3P51956 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.15■□□□□ 0.5
NEK3P51956 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.15■□□□□ 0.5
NEK3P51956 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
NEK3P51956 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
NEK3P51956 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
NEK3P51956 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.14■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms