Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.3■□□□□ 0.84
CTCFP49711 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CTCFP49711 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CTCFP49711 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 MIR1909-201ENST00000411312 80 ntBASIC20.3■□□□□ 0.84
CTCFP49711 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.3■□□□□ 0.84
CTCFP49711 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 KRT8P48-201ENST00000515599 1220 ntBASIC20.3■□□□□ 0.84
CTCFP49711 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.3■□□□□ 0.84
CTCFP49711 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.3■□□□□ 0.84
CTCFP49711 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.3■□□□□ 0.84
CTCFP49711 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC20.3■□□□□ 0.84
CTCFP49711 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC20.3■□□□□ 0.84
CTCFP49711 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC20.3■□□□□ 0.84
CTCFP49711 AC004233.3-201ENST00000607794 1269 ntBASIC20.3■□□□□ 0.84
CTCFP49711 AC068587.10-201ENST00000641210 219 ntBASIC20.3■□□□□ 0.84
CTCFP49711 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.3■□□□□ 0.84
CTCFP49711 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 AC092919.2-201ENST00000623631 1645 ntBASIC20.3■□□□□ 0.84
CTCFP49711 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CTCFP49711 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.29■□□□□ 0.84
CTCFP49711 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 AL024508.2-201ENST00000607749 1894 ntBASIC20.29■□□□□ 0.84
CTCFP49711 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.29■□□□□ 0.84
CTCFP49711 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 AC002056.1-201ENST00000395613 760 ntBASIC20.29■□□□□ 0.84
CTCFP49711 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.29■□□□□ 0.84
CTCFP49711 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.29■□□□□ 0.84
CTCFP49711 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC20.29■□□□□ 0.84
CTCFP49711 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.29■□□□□ 0.84
CTCFP49711 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.29■□□□□ 0.84
CTCFP49711 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.29■□□□□ 0.84
CTCFP49711 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
CTCFP49711 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CTCFP49711 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTCFP49711 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTCFP49711 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CTCFP49711 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTCFP49711 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 AP000974.1-201ENST00000623909 2387 ntBASIC20.28■□□□□ 0.84
CTCFP49711 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTCFP49711 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTCFP49711 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.28■□□□□ 0.84
CTCFP49711 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTCFP49711 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTCFP49711 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.28■□□□□ 0.84
CTCFP49711 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTCFP49711 FAM58DP-201ENST00000428076 619 ntBASIC20.28■□□□□ 0.84
CTCFP49711 AL671277.1-201ENST00000429656 993 ntBASIC20.28■□□□□ 0.84
CTCFP49711 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.28■□□□□ 0.84
CTCFP49711 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC20.28■□□□□ 0.84
CTCFP49711 CXCL1P1-201ENST00000502804 216 ntBASIC20.28■□□□□ 0.84
CTCFP49711 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.28■□□□□ 0.84
CTCFP49711 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC20.28■□□□□ 0.84
CTCFP49711 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.28■□□□□ 0.84
CTCFP49711 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 MIR6805-201ENST00000615055 62 ntBASIC20.28■□□□□ 0.84
CTCFP49711 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.28■□□□□ 0.84
CTCFP49711 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.28■□□□□ 0.84
CTCFP49711 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CTCFP49711 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
CTCFP49711 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTCFP49711 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTCFP49711 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTCFP49711 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTCFP49711 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.27■□□□□ 0.84
CTCFP49711 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CTCFP49711 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTCFP49711 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CTCFP49711 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
CTCFP49711 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.27■□□□□ 0.84
CTCFP49711 AL353593.2-201ENST00000602529 1483 ntBASIC20.27■□□□□ 0.84
CTCFP49711 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms