Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.43□□□□□ -0.1
CDX1P47902 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CDX1P47902 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC14.43□□□□□ -0.1
CDX1P47902 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CDX1P47902 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CDX1P47902 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 ISCU-203ENST00000431221 799 ntTSL 2 BASIC14.43□□□□□ -0.1
CDX1P47902 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC14.43□□□□□ -0.1
CDX1P47902 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.43□□□□□ -0.1
CDX1P47902 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.43□□□□□ -0.1
CDX1P47902 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.43□□□□□ -0.1
CDX1P47902 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CDX1P47902 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC14.43□□□□□ -0.1
CDX1P47902 CROCCP2-202ENST00000412962 2773 ntBASIC14.43□□□□□ -0.1
CDX1P47902 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.43□□□□□ -0.1
CDX1P47902 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CDX1P47902 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.43□□□□□ -0.1
CDX1P47902 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC14.43□□□□□ -0.1
CDX1P47902 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.43□□□□□ -0.1
CDX1P47902 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CDX1P47902 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CDX1P47902 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC14.42□□□□□ -0.1
CDX1P47902 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CDX1P47902 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.42□□□□□ -0.1
CDX1P47902 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
CDX1P47902 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CDX1P47902 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.42□□□□□ -0.1
CDX1P47902 CD320-202ENST00000537716 1119 ntTSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 AC104390.1-201ENST00000555663 520 ntBASIC14.42□□□□□ -0.1
CDX1P47902 ZNF444P1-201ENST00000559497 298 ntBASIC14.42□□□□□ -0.1
CDX1P47902 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC14.42□□□□□ -0.1
CDX1P47902 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC14.42□□□□□ -0.1
CDX1P47902 AP000550.4-202ENST00000639755 178 ntBASIC14.42□□□□□ -0.1
CDX1P47902 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CDX1P47902 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.42□□□□□ -0.1
CDX1P47902 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.42□□□□□ -0.1
CDX1P47902 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.42□□□□□ -0.1
CDX1P47902 HEIH-201ENST00000623091 1652 ntBASIC14.42□□□□□ -0.1
CDX1P47902 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.42□□□□□ -0.1
CDX1P47902 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CDX1P47902 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
CDX1P47902 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 LINC01311-201ENST00000565162 1445 ntBASIC14.41□□□□□ -0.1
CDX1P47902 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CDX1P47902 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CDX1P47902 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms