Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC22.99■■□□□ 1.27
COL18A1P39060 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
COL18A1P39060 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
COL18A1P39060 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
COL18A1P39060 GATB-205ENST00000508611 605 ntTSL 2 BASIC22.99■■□□□ 1.27
COL18A1P39060 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC22.99■■□□□ 1.27
COL18A1P39060 NAA60-208ENST00000570819 833 ntTSL 2 BASIC22.99■■□□□ 1.27
COL18A1P39060 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
COL18A1P39060 YTHDF3-AS1-201ENST00000603538 718 ntBASIC22.99■■□□□ 1.27
COL18A1P39060 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC22.98■■□□□ 1.27
COL18A1P39060 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
COL18A1P39060 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC22.98■■□□□ 1.27
COL18A1P39060 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL18A1P39060 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC22.98■■□□□ 1.27
COL18A1P39060 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC22.98■■□□□ 1.27
COL18A1P39060 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC22.98■■□□□ 1.27
COL18A1P39060 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC22.98■■□□□ 1.27
COL18A1P39060 WRB-204ENST00000398753 699 ntTSL 3 BASIC22.98■■□□□ 1.27
COL18A1P39060 DUT-210ENST00000559935 569 ntTSL 3 BASIC22.98■■□□□ 1.27
COL18A1P39060 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL18A1P39060 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL18A1P39060 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
COL18A1P39060 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
COL18A1P39060 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC22.98■■□□□ 1.27
COL18A1P39060 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC22.98■■□□□ 1.27
COL18A1P39060 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC22.97■■□□□ 1.27
COL18A1P39060 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC22.97■■□□□ 1.27
COL18A1P39060 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC22.97■■□□□ 1.27
COL18A1P39060 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC22.97■■□□□ 1.27
COL18A1P39060 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC22.97■■□□□ 1.27
COL18A1P39060 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC22.97■■□□□ 1.27
COL18A1P39060 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
COL18A1P39060 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 AC236430.1-201ENST00000402231 743 ntBASIC22.97■■□□□ 1.27
COL18A1P39060 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC22.97■■□□□ 1.27
COL18A1P39060 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC22.97■■□□□ 1.27
COL18A1P39060 AC087641.1-201ENST00000557561 1021 ntBASIC22.97■■□□□ 1.27
COL18A1P39060 RARRES2P8-201ENST00000566335 367 ntBASIC22.97■■□□□ 1.27
COL18A1P39060 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
COL18A1P39060 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
COL18A1P39060 HLA-DQB1-201ENST00000374943 1656 ntBASIC22.96■■□□□ 1.27
COL18A1P39060 HNRNPRP1-201ENST00000453465 1695 ntBASIC22.96■■□□□ 1.27
COL18A1P39060 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC22.96■■□□□ 1.27
COL18A1P39060 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 GSAP-205ENST00000430584 600 ntTSL 5 BASIC22.96■■□□□ 1.27
COL18A1P39060 AC002472.2-201ENST00000442739 958 ntBASIC22.96■■□□□ 1.27
COL18A1P39060 RN7SL589P-201ENST00000481268 310 ntBASIC22.96■■□□□ 1.27
COL18A1P39060 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC22.96■■□□□ 1.27
COL18A1P39060 HFE2-206ENST00000634927 506 ntTSL 4 BASIC22.96■■□□□ 1.27
COL18A1P39060 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC22.96■■□□□ 1.27
COL18A1P39060 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC22.96■■□□□ 1.27
COL18A1P39060 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 REXO1L9P-201ENST00000604264 2108 ntBASIC22.96■■□□□ 1.27
COL18A1P39060 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 USP49-202ENST00000373010 2446 ntTSL 5 BASIC22.96■■□□□ 1.27
COL18A1P39060 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 BAD-202ENST00000394531 631 ntTSL 3 BASIC22.96■■□□□ 1.27
COL18A1P39060 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 RBM7-207ENST00000544582 692 ntTSL 3 BASIC22.96■■□□□ 1.27
COL18A1P39060 AL512356.2-201ENST00000546955 174 ntBASIC22.96■■□□□ 1.27
COL18A1P39060 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC22.96■■□□□ 1.27
COL18A1P39060 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC22.96■■□□□ 1.27
COL18A1P39060 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC22.96■■□□□ 1.27
COL18A1P39060 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
COL18A1P39060 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC22.96■■□□□ 1.27
COL18A1P39060 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC22.95■■□□□ 1.27
COL18A1P39060 AKAP8P1-201ENST00000434743 1349 ntBASIC22.95■■□□□ 1.27
COL18A1P39060 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC22.95■■□□□ 1.27
COL18A1P39060 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC22.95■■□□□ 1.26
COL18A1P39060 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL18A1P39060 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL18A1P39060 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL18A1P39060 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC22.95■■□□□ 1.26
COL18A1P39060 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
COL18A1P39060 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
COL18A1P39060 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC22.95■■□□□ 1.26
COL18A1P39060 CD81-202ENST00000381036 880 ntTSL 3 BASIC22.95■■□□□ 1.26
COL18A1P39060 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC22.95■■□□□ 1.26
COL18A1P39060 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC22.95■■□□□ 1.26
COL18A1P39060 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC22.95■■□□□ 1.26
COL18A1P39060 DUX4L17-201ENST00000557360 1267 ntBASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms