Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFX1P22670 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFX1P22670 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
RFX1P22670 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX1P22670 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX1P22670 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.2■□□□□ 0.66
RFX1P22670 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFX1P22670 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX1P22670 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFX1P22670 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
RFX1P22670 SIRPAP1-201ENST00000448467 1770 ntBASIC19.19■□□□□ 0.66
RFX1P22670 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.19■□□□□ 0.66
RFX1P22670 Z83836.1-201ENST00000624605 1642 ntBASIC19.19■□□□□ 0.66
RFX1P22670 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
RFX1P22670 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.19■□□□□ 0.66
RFX1P22670 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.19■□□□□ 0.66
RFX1P22670 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.19■□□□□ 0.66
RFX1P22670 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 AC090616.6-201ENST00000582640 721 ntBASIC19.19■□□□□ 0.66
RFX1P22670 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.19■□□□□ 0.66
RFX1P22670 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.19■□□□□ 0.66
RFX1P22670 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.19■□□□□ 0.66
RFX1P22670 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
RFX1P22670 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.19■□□□□ 0.66
RFX1P22670 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
RFX1P22670 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFX1P22670 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
RFX1P22670 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX1P22670 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX1P22670 MRPL3P1-201ENST00000400109 1033 ntBASIC19.18■□□□□ 0.66
RFX1P22670 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
RFX1P22670 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.18■□□□□ 0.66
RFX1P22670 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
RFX1P22670 AL390719.2-201ENST00000606993 987 ntBASIC19.18■□□□□ 0.66
RFX1P22670 BX640515.1-201ENST00000617215 977 ntBASIC19.18■□□□□ 0.66
RFX1P22670 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 BX276092.7-203ENST00000637198 1536 ntBASIC19.18■□□□□ 0.66
RFX1P22670 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX1P22670 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.18■□□□□ 0.66
RFX1P22670 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.18■□□□□ 0.66
RFX1P22670 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFX1P22670 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
RFX1P22670 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.17■□□□□ 0.66
RFX1P22670 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.17■□□□□ 0.66
RFX1P22670 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX1P22670 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX1P22670 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX1P22670 VENTXP7-201ENST00000475503 772 ntBASIC19.17■□□□□ 0.66
RFX1P22670 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.17■□□□□ 0.66
RFX1P22670 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.17■□□□□ 0.66
RFX1P22670 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.17■□□□□ 0.66
RFX1P22670 RNF126P1-202ENST00000569893 925 ntBASIC19.17■□□□□ 0.66
RFX1P22670 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.17■□□□□ 0.66
RFX1P22670 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.17■□□□□ 0.66
RFX1P22670 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
RFX1P22670 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RFX1P22670 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms