Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.56■□□□□ 0.4
MSH3P20585 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.56■□□□□ 0.4
MSH3P20585 AC012317.2-201ENST00000623305 2251 ntBASIC17.56■□□□□ 0.4
MSH3P20585 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
MSH3P20585 BX276092.7-203ENST00000637198 1536 ntBASIC17.56■□□□□ 0.4
MSH3P20585 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSH3P20585 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
MSH3P20585 TP73-AS1-210ENST00000637775 1455 ntBASIC17.56■□□□□ 0.4
MSH3P20585 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.56■□□□□ 0.4
MSH3P20585 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.56■□□□□ 0.4
MSH3P20585 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
MSH3P20585 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
MSH3P20585 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH3P20585 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH3P20585 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH3P20585 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MSH3P20585 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH3P20585 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.55■□□□□ 0.4
MSH3P20585 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.55■□□□□ 0.4
MSH3P20585 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MSH3P20585 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH3P20585 POM121L3P-201ENST00000419331 1163 ntBASIC17.55■□□□□ 0.4
MSH3P20585 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
MSH3P20585 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.55■□□□□ 0.4
MSH3P20585 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.55■□□□□ 0.4
MSH3P20585 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.55■□□□□ 0.4
MSH3P20585 BNIP3P18-201ENST00000593976 575 ntBASIC17.55■□□□□ 0.4
MSH3P20585 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 AC138894.3-201ENST00000603787 634 ntBASIC17.55■□□□□ 0.4
MSH3P20585 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
MSH3P20585 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH3P20585 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.55■□□□□ 0.4
MSH3P20585 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSH3P20585 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
MSH3P20585 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
MSH3P20585 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
MSH3P20585 AC010460.3-201ENST00000511359 1579 ntBASIC17.54■□□□□ 0.4
MSH3P20585 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH3P20585 AC006116.8-202ENST00000587620 1550 ntBASIC17.54■□□□□ 0.4
MSH3P20585 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
MSH3P20585 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH3P20585 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.54■□□□□ 0.4
MSH3P20585 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH3P20585 NUS1P2-201ENST00000417358 873 ntBASIC17.54■□□□□ 0.4
MSH3P20585 NUS1P1-201ENST00000446295 882 ntBASIC17.54■□□□□ 0.4
MSH3P20585 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH3P20585 FOSL1P1-201ENST00000511041 816 ntBASIC17.54■□□□□ 0.4
MSH3P20585 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH3P20585 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.54■□□□□ 0.4
MSH3P20585 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
MSH3P20585 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
MSH3P20585 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.54■□□□□ 0.4
MSH3P20585 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
MSH3P20585 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSH3P20585 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.53■□□□□ 0.4
MSH3P20585 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSH3P20585 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms