Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.12■□□□□ 0.33
HOXC4P09017 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HOXC4P09017 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HOXC4P09017 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HOXC4P09017 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HOXC4P09017 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HOXC4P09017 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXC4P09017 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
HOXC4P09017 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.11■□□□□ 0.33
HOXC4P09017 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
HOXC4P09017 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.11■□□□□ 0.33
HOXC4P09017 AL135999.2-201ENST00000622438 1686 ntBASIC17.11■□□□□ 0.33
HOXC4P09017 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXC4P09017 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.11■□□□□ 0.33
HOXC4P09017 KRT18P3-201ENST00000451602 1288 ntBASIC17.11■□□□□ 0.33
HOXC4P09017 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.11■□□□□ 0.33
HOXC4P09017 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 POLD2P1-201ENST00000511220 997 ntBASIC17.11■□□□□ 0.33
HOXC4P09017 PGAM5P1-201ENST00000518923 814 ntBASIC17.11■□□□□ 0.33
HOXC4P09017 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.11■□□□□ 0.33
HOXC4P09017 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.11■□□□□ 0.33
HOXC4P09017 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
HOXC4P09017 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HOXC4P09017 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HOXC4P09017 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.11■□□□□ 0.33
HOXC4P09017 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HOXC4P09017 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.11■□□□□ 0.33
HOXC4P09017 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HOXC4P09017 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
HOXC4P09017 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
HOXC4P09017 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
HOXC4P09017 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HOXC4P09017 AC133963.1-201ENST00000504166 1679 ntBASIC17.1■□□□□ 0.33
HOXC4P09017 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
HOXC4P09017 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC4P09017 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXC4P09017 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HOXC4P09017 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC4P09017 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC4P09017 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.1■□□□□ 0.33
HOXC4P09017 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC4P09017 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXC4P09017 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC4P09017 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXC4P09017 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXC4P09017 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.1■□□□□ 0.33
HOXC4P09017 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC4P09017 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXC4P09017 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
HOXC4P09017 AL590787.1-201ENST00000568856 1315 ntBASIC17.1■□□□□ 0.33
HOXC4P09017 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXC4P09017 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC4P09017 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXC4P09017 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXC4P09017 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.1■□□□□ 0.33
HOXC4P09017 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC4P09017 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC4P09017 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HOXC4P09017 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 AL390961.4-201ENST00000623958 2535 ntBASIC17.09■□□□□ 0.33
HOXC4P09017 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXC4P09017 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HOXC4P09017 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HOXC4P09017 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 PTCHD3P3-201ENST00000403073 906 ntBASIC17.09■□□□□ 0.33
HOXC4P09017 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
HOXC4P09017 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXC4P09017 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXC4P09017 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXC4P09017 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HOXC4P09017 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXC4P09017 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC4P09017 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms