Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.37■□□□□ 0.85
CTDNEP1O95476 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTDNEP1O95476 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTDNEP1O95476 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 AC132938.5-201ENST00000624980 1813 ntBASIC20.37■□□□□ 0.85
CTDNEP1O95476 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 AC103564.2-201ENST00000432853 1299 ntBASIC20.36■□□□□ 0.85
CTDNEP1O95476 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 AC069148.1-201ENST00000608741 768 ntBASIC20.36■□□□□ 0.85
CTDNEP1O95476 AC092119.3-201ENST00000612618 583 ntBASIC20.36■□□□□ 0.85
CTDNEP1O95476 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 AC046185.3-201ENST00000623228 1824 ntBASIC20.36■□□□□ 0.85
CTDNEP1O95476 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.36■□□□□ 0.85
CTDNEP1O95476 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTDNEP1O95476 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
CTDNEP1O95476 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CTDNEP1O95476 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.35■□□□□ 0.85
CTDNEP1O95476 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 VENTXP7-201ENST00000475503 772 ntBASIC20.35■□□□□ 0.85
CTDNEP1O95476 Z69720.1-201ENST00000601483 472 ntBASIC20.35■□□□□ 0.85
CTDNEP1O95476 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.35■□□□□ 0.85
CTDNEP1O95476 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CTDNEP1O95476 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.35■□□□□ 0.85
CTDNEP1O95476 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTDNEP1O95476 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.34■□□□□ 0.85
CTDNEP1O95476 PRORSD1P-202ENST00000563365 2154 ntBASIC20.34■□□□□ 0.85
CTDNEP1O95476 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 IGHV3-52-201ENST00000519770 353 ntBASIC20.34■□□□□ 0.85
CTDNEP1O95476 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 AC091076.1-201ENST00000610741 619 ntBASIC20.34■□□□□ 0.85
CTDNEP1O95476 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.34■□□□□ 0.85
CTDNEP1O95476 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTDNEP1O95476 AC060834.1-201ENST00000443027 2032 ntBASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms