Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LMX1BO60663 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15.51■□□□□ 0.07
LMX1BO60663 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
LMX1BO60663 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.51■□□□□ 0.07
LMX1BO60663 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.51■□□□□ 0.07
LMX1BO60663 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.51■□□□□ 0.07
LMX1BO60663 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
LMX1BO60663 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1BO60663 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1BO60663 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LMX1BO60663 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.5■□□□□ 0.07
LMX1BO60663 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.5■□□□□ 0.07
LMX1BO60663 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.5■□□□□ 0.07
LMX1BO60663 AD000864.1-201ENST00000624076 2295 ntBASIC15.5■□□□□ 0.07
LMX1BO60663 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.5■□□□□ 0.07
LMX1BO60663 FDX1P1-201ENST00000449115 551 ntBASIC15.5■□□□□ 0.07
LMX1BO60663 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC15.5■□□□□ 0.07
LMX1BO60663 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.5■□□□□ 0.07
LMX1BO60663 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC15.5■□□□□ 0.07
LMX1BO60663 TK1-205ENST00000590862 642 ntTSL 3 BASIC15.5■□□□□ 0.07
LMX1BO60663 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.5■□□□□ 0.07
LMX1BO60663 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.5■□□□□ 0.07
LMX1BO60663 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.5■□□□□ 0.07
LMX1BO60663 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LMX1BO60663 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LMX1BO60663 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LMX1BO60663 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LMX1BO60663 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LMX1BO60663 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.5■□□□□ 0.07
LMX1BO60663 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LMX1BO60663 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1BO60663 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 KRT8P47-201ENST00000604727 1398 ntBASIC15.49■□□□□ 0.07
LMX1BO60663 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1BO60663 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
LMX1BO60663 AL138688.1-201ENST00000624851 1594 ntBASIC15.49■□□□□ 0.07
LMX1BO60663 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.49■□□□□ 0.07
LMX1BO60663 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
LMX1BO60663 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 AC022898.2-201ENST00000616822 1312 ntBASIC15.49■□□□□ 0.07
LMX1BO60663 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1BO60663 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1BO60663 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
LMX1BO60663 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1BO60663 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
LMX1BO60663 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
LMX1BO60663 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.49■□□□□ 0.07
LMX1BO60663 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC15.49■□□□□ 0.07
LMX1BO60663 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.49■□□□□ 0.07
LMX1BO60663 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC15.49■□□□□ 0.07
LMX1BO60663 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
LMX1BO60663 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1BO60663 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1BO60663 AC079602.3-201ENST00000623931 403 ntBASIC15.49■□□□□ 0.07
LMX1BO60663 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.49■□□□□ 0.07
LMX1BO60663 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
LMX1BO60663 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LMX1BO60663 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC15.49■□□□□ 0.07
LMX1BO60663 KRT8P10-201ENST00000450021 1447 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms